Staphylococcus schleiferi 1360-13: LH95_05375
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Entry
LH95_05375 CDS
T04012
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ssch
Staphylococcus schleiferi 1360-13
Pathway
ssch03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LH95_05375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssch03400
]
LH95_05375
Enzymes [BR:
ssch01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LH95_05375
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LH95_05375
DNA repair and recombination proteins [BR:
ssch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LH95_05375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Josephin
Motif
Other DBs
NCBI-ProteinID:
AKS66899
LinkDB
All DBs
Position
1145172..1146044
Genome browser
AA seq
290 aa
AA seq
DB search
MPELPEVEHVTRGIKPFALNQKIIDVSFSQPVILGKENGKATIIKGISLDDFKRYTVNYT
ITNIQRRSKYILFEIQHEQLERMLISHLGMAGGFFIVNEIDDIPILNYRKHWQVVFQLEN
GMKLVYSDIRRFGEIRNVEALMDYPSLLEIAPEPFEDEALAHFLSKSNEKKYSRMAIKAF
ILDHRVIAGCGNIYACEALFDAKLNPNTTVNQLSDAQKTEVFDSVVKVLNMGILNGGTSV
SDYVHADGQKGTMQEYLNVYKKKNCTSCDSAIETAIIAGRNTHFCPVCQR
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaagttgaacacgtcacaagaggaatcaaaccatttgctttaaac
caaaagattattgatgtgtctttttctcaacctgttattttaggaaaagaaaatggaaag
gcaacgattataaaaggtataagtcttgacgactttaaacgatatacagtgaactatacg
attacaaatattcagcgccgaagtaaatatattttatttgagattcaacatgaacaatta
gaacgtatgttaatatctcatctaggcatggctggtggattttttatcgtaaatgaaatc
gatgatataccgatattaaactatcgaaaacattggcaagtagtctttcaattagaaaat
ggtatgaaactagtgtatagtgatattcgtcgttttggtgaaattagaaatgttgaagca
ttaatggattatccatctttattagaaatagcaccagagccatttgaagatgaggcttta
gcacattttctgtctaaaagtaatgaaaaaaaatattcaaggatggcaataaaggcattt
attttagaccatcgtgtgattgccggatgtggcaatatttatgcgtgtgaagctttattt
gatgcgaagttgaatcctaacacgacagtgaatcagctatcagatgcacaaaaaactgaa
gtattcgatagtgttgtgaaagtgcttaatatgggtattttgaatggtgggacaagcgtt
tcagattatgttcatgcagatggacaaaaaggaacaatgcaagaatatttaaatgtttat
aagaagaaaaactgtacgtcttgtgactcggcaatagaaacggcgattatagcaggacgt
aatacacatttttgtccggtttgccaaagatag
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