Staphylococcus schleiferi 1360-13: LH95_05590
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Entry
LH95_05590 CDS
T04012
Name
(GenBank) single-stranded-DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ssch
Staphylococcus schleiferi 1360-13
Pathway
ssch03410
Base excision repair
ssch03430
Mismatch repair
ssch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LH95_05590
03430 Mismatch repair
LH95_05590
03440 Homologous recombination
LH95_05590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssch03400
]
LH95_05590
DNA repair and recombination proteins [BR:
ssch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LH95_05590
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LH95_05590
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LH95_05590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
DUF1424
DUF1173
Motif
Other DBs
NCBI-ProteinID:
AKS66941
LinkDB
All DBs
Position
1188484..1190766
Genome browser
AA seq
760 aa
AA seq
DB search
MIQSNFQWQTRQVDSLIDDALVDKYKLTPMMKLILESKGYTDGLELDRVLAPSHMIHDPQ
ALSDMDKAISRIHKAIQNGEKILVYGDYDADGVTSTTIMVKTLQQLGATVGWYIPNRFTE
GYGPSEMAFRNACDEGVTLIITVDNGIQGHHEIELVQNLGVDVIVTDHHEMGETLPPAFA
IIHPMHPDFNYPFKYLCGAGVAFKLADMLLEELPHSFWVLAMIGTIADLVSLTDENRMIV
QKGLTYINEETPVAIRALLDQAQYQDDINEETIGFIIAPRLNAVGRLDDAGLAAELLMSD
DLEESLFLAEQVEHFNVERKEIVQQIVDEAMEMAQEAVSEGQKFLVLAKEDWHEGVLGIV
ASRIVETFHLPTMILNIDEAQQHAKGSSRSISQVSMFEALSSESTLITKFGGHHMAAGLT
MPIENVDPLRNALNAWMTERFNVDDLQPVKMIDVVLNIEHVTIEQIRSLERLRPFGMDFN
RPVFQIDGLTIQQAKAIGQNQNHLKVTFNEQNLQGLFWNHGELNQELMEDQEIDIIGELQ
INEWNGNRTPQFIMTDIRSNDRQILDYRSKNKRLPQFEGKDQVCYLIHPNKDKSSHHEFY
YGEVIPEDYDKCVMRDLPLTMEDIKLSCRYIKASQIYLVFDHRHSIYFEGLPKDDTFKKC
YKALFQKGKTNLETEGMALSQYLQIKPTMLKFILKVFLDLQIISQKDGIIEIAHSREKQS
ISASRIYQARVQRIEVEKQLLYEEFDAIKSWFVNELAGIE
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgatacaatcgaattttcaatggcaaacgcgtcaagtcgatagcttgattgatgacgct
ttagtcgataaatataaattaacaccgatgatgaaattaatactagaaagcaaagggtac
accgatggattagaacttgatcgcgtattagcgccgagtcatatgattcatgaccctcaa
gcgttaagtgatatggataaagccatatcacgaatacataaagcaattcaaaatggtgaa
aagatacttgtttatggagactatgatgcggacggtgtaacttcgacgaccattatggtt
aaaactttgcaacaacttggcgccacagtagggtggtatatccctaaccgatttacagaa
ggatatggtccgagtgaaatggcctttagaaatgcctgtgatgaaggggttacgttaatt
attacagttgataatggtatacaaggtcatcatgaaattgagcttgttcaaaatttaggc
gtggatgtgattgttacagaccatcatgaaatgggggaaacgctgcctcccgcttttgca
attatccatccgatgcaccctgatttcaattatccatttaaatatttatgtggtgcaggt
gtggcgtttaagttagcagatatgcttttagaagaattgccacattcattttgggtttta
gcgatgattggaacgattgctgatttagtttctttgaccgatgaaaatcggatgattgtt
caaaaaggattgacttatatcaatgaggagacacctgtggctattcgtgctttattagat
caggcacaataccaagatgatattaatgaagaaacaattggttttattattgcgcctcga
ttaaatgcggtaggccgtttagacgacgcgggtttagctgctgaattattaatgtcagat
gatctagaagagtcgctatttctagcagagcaagtggagcatttcaatgtggaacgtaaa
gaaattgtccagcaaatcgttgatgaagcgatggagatggctcaagaagctgtcagtgag
ggtcaaaaatttttagttttagcaaaagaagattggcacgaaggtgtattaggaattgtt
gcttcaagaattgttgaaacatttcatctgcctactatgattttgaatattgatgaagcc
caacaacatgcaaaaggttcatctcgaagtatttcacaagtctcaatgtttgaagctcta
tcttcagaatctacattaattacaaaatttggtggtcatcatatggctgcgggattaaca
atgcccatagaaaatgtagatccgctgagaaacgcgttaaatgcatggatgacggagcgt
tttaatgtcgatgatcttcaaccggtcaaaatgattgatgttgttttaaatatcgaacat
gtaacgattgaacaaatccgctctttagaacggttacgcccttttggcatggattttaac
agacctgtatttcaaattgatggcttgaccatccaacaagcgaaagcgattggtcaaaat
cagaatcatcttaaagttacttttaacgaacaaaatttacaaggcttgttttggaatcat
ggtgaattaaaccaagaattaatggaagaccaagaaatagatatcattggtgaacttcaa
attaatgaatggaatgggaatcgtacgcctcaatttataatgactgatataagaagtaat
gatcgacaaattttagattatcgcagcaaaaataagcggttacctcaatttgagggtaaa
gatcaagtgtgttatctcatacatcccaataaagataaatctagtcatcatgaattctat
tatggtgaggtcattccagaagattatgataaatgtgtaatgagagatttaccactcact
atggaagatataaaactgtcatgtcgttacattaaagcatctcaaatttatcttgtattt
gatcatcggcattctatttattttgaaggtttaccgaaagatgatacgtttaaaaaatgt
tataaagcactatttcaaaagggtaaaacaaatctagaaactgaaggtatggcactgagt
caatatttgcaaattaaacccactatgctgaaatttattttaaaagttttcttagactta
caaattatttcacaaaaagatggtataattgagattgcgcattctcgtgaaaagcagtct
atttcagctagtcgcatttatcaagcacgggtacagcgaattgaagttgaaaaacagctc
ttatatgaagaatttgatgccattaagtcttggtttgttaatgaattagcagggattgaa
tga
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