Staphylococcus schleiferi 1360-13: LH95_09635
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Entry
LH95_09635 CDS
T04012
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssch
Staphylococcus schleiferi 1360-13
Pathway
ssch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH95_09635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssch03019
]
LH95_09635
03400 DNA repair and recombination proteins [BR:
ssch03400
]
LH95_09635
Enzymes [BR:
ssch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LH95_09635
Messenger RNA biogenesis [BR:
ssch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH95_09635
DNA repair and recombination proteins [BR:
ssch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LH95_09635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AKS67698
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All DBs
Position
complement(2040125..2041906)
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AA seq
593 aa
AA seq
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MEQTLSHYFGYQSFRPGQKEIIELILNHHHTLGVLPTGGGKSICYQVPGLMLEGTTIVIS
PLISLMKDQVDQLKAMGIAAAYLNSSLTAQAQKEIEQQLVDGELKFLYVAPERFESTYFE
MLLRRVNIALVAFDEAHCISKWGHDFRPSYQAVIQRVLAMPQHFAIIALTATATTEVQQD
IMSRLMIHPNHVVKTSIRRRNLKFQVNATYQRQKFIVDYVKSHAKVSGIIYCSTRKQVEA
LYEALEDVGVASTYYHAGLTSKQRNEAQNDFLYDRIRVVIATNAFGMGIDKSNVRYVIHY
NMPGDLESYYQEAGRAGRDGLESDCILLYSDRDISLHQYFISSSKADDDYKERMGEKLTK
MIQYTKTSKCLEATLVHYFEPNEKLEECQQCSNCVDKNKTYDMTNEAKMIVSCVARLRQN
ESYQTVIQVLRGEKTDYIRHHAYEALSTYGIMKHYTTGELHHLIDELRFKGFLNEHDEIL
LCDQSVETLLYDETKIYTTPFKRKSKETVNINTVEGVDRILFEKLVEVRQHMSEKMNIPP
TNIFTDYTLEAFAKRKPLSKQDMIQIEGVGSYKLKHYCPEFLTAIQDYKMHSS
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacactgtcgcattattttggataccagagttttcgtcctggtcaaaaagaa
attattgaattgattttaaatcatcatcatacattaggtgttttacctactgggggtggt
aaatcgatttgttaccaagtgccagggctgatgttagaaggtacaacgattgtaatcagc
ccgttaatttctttaatgaaagatcaagtcgatcaattgaaagcgatgggcattgcagcg
gcttatctaaatagtagtttaactgcacaagcccaaaaagaaatcgaacaacaattagtc
gatggtgaactaaaatttttgtatgttgcaccagagcgattcgagagtacgtattttgaa
atgctgttgcgccgtgtcaatattgcacttgtcgcatttgatgaagcacactgtatatcg
aaatggggccatgattttcgtccgagttatcaagcggtcattcaacgtgtcctagctatg
cctcaacattttgcgattatagcactcactgcgactgctacaacggaagtacaacaagat
attatgtcgcgcttgatgattcatcctaatcatgtcgtaaaaacgagtattagacgtcgt
aatttaaaatttcaagtcaatgcaacttatcaaagacaaaagtttattgttgattatgtt
aaaagtcatgcgaaggtttcgggcattatttattgctctacccgtaaacaagtagaggcg
ctttatgaagcacttgaggatgtaggtgtcgcttcaacttattatcatgcagggttaaca
tctaagcaaagaaatgaagcacaaaatgattttttgtacgatcgtattcgcgtcgttatc
gccacaaacgcctttggtatgggtattgataaatcgaatgtacgttacgttattcattac
aatatgccgggtgatttggaatcatattatcaagaagcgggacgtgcaggccgagatggt
ttagaaagtgattgtatattattgtatagtgatcgtgatatcagtttacatcagtatttt
attagtagttcaaaagcggatgatgattataaggaacgcatgggtgaaaagcttacgaag
atgattcaatatactaaaacaagtaagtgcttagaagctacactcgttcattatttcgag
cccaatgaaaaattagaagagtgtcaacaatgtagtaactgtgttgataaaaataaaacg
tatgacatgacaaatgaagctaaaatgattgtcagttgtgttgcacgtttaagacaaaat
gaaagttatcaaacagttattcaagtcttacgtggtgaaaagacagactacatacgtcat
cacgcgtatgaggcactttccacatatggcatcatgaaacattatacgacaggtgaatta
catcatttaattgacgaattgcgctttaaaggttttttaaatgaacacgatgaaattttg
ttgtgtgatcaatctgtcgagacgttattgtatgacgaaacgaaaatttatacgacacct
ttcaaacgaaaatcaaaagaaaccgttaatattaatactgtcgaaggtgtagaccgcatt
ttatttgaaaaattagttgaagtacgtcaacatatgagcgaaaaaatgaatattccaccg
acgaatatttttacggattatacattagaagcatttgcgaaacgtaagccactttcaaag
caagatatgattcaaattgaaggtgtaggtagttataaattaaaacactactgtcctgaa
tttttaacagcgattcaagattataaaatgcatagttcataa
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