Staphylococcus schleiferi 1360-13: LH95_10810
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Entry
LH95_10810 CDS
T04012
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssch
Staphylococcus schleiferi 1360-13
Pathway
ssch03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LH95_10810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssch03400
]
LH95_10810
Enzymes [BR:
ssch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LH95_10810
DNA repair and recombination proteins [BR:
ssch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LH95_10810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
Glyco_hydro_115
RecG_dom3_C
DUF1421
AAA_22
IstB_IS21
KGK
Motif
Other DBs
NCBI-ProteinID:
AKS67911
LinkDB
All DBs
Position
complement(2273306..2276818)
Genome browser
AA seq
1170 aa
AA seq
DB search
MKSIINEIINRDTRFKDLSEQVGHANLLVTGLTPAAKASIIAELYQSDHRQVLLVTNNLY
QADKLEADLLQSVPDDEIYKYPVQDIMIEEFSTQSPDLMSERVRTLTALANERRGLYIVP
LNGLKKLLTPKALWQEHQLSLEVGNDIDVDLFLDKLVNMGYRRETVVSNIGEFSVRGGII
DIYPLLGEPLRIELFDTEVDSIRQFDVESQRSSENVEIAEITTAHDYIMTDAVRQRMMEG
LKQAYETTRPKIEKSVRQDLKDTYERFNLLEDTHFDPQILRRLIAWMYETPTTILDYFKD
NAIVLVDEYNRVRETEETLTTETEAFLQNLIESGKGFIGQRFMEDDTFDRMFRQFKITFF
TLFTASMPMKLDHIVKFSCKPVQQFYGQYDIMASEFQRYMKQGDRMVVMVETETKKERIH
AMLSEMHVPTLLEPEDDAMEPGHAAIIQGSLSEGFELPYMSMVVVTERELFKSKQKKTSK
KRRKTMSNAEKIKSYQELNVGDYVVHVHHGVGRYLGVETLEVGEVHRDYIKIQYQGTDQL
YVPVDQMEQVQKYVGSEDKTPKLYKLGGSEWKKTKAKVQSSVEDIADELIDLYKEREQSV
GYAFGPDTEEQHAFEMDFPYDLTDDQAKSILEIKEDMESQRPMDRLLCGDVGYGKTEVAV
RAAFKAVMSGKQVAFLVPTTILAQQHYETLIERMRDFPVEIHLMSRFRTPKEIRETKEGL
KSGFVDIVVGTHKLLGKAVEYKNLGLLIVDEEQRFGVCHKEKIKTLKANVDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRGGQVFYLYNRV
QSIYEKREQLQMLMPDASIGVAHGQLPERDLEETMLDFINGEYDILVTTTIIETGVDVPN
ANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHATNKVLNETAEDRLQAIKEFTEL
GSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETVAPEIE
MNLRLDAYLPAEYIRNEQAKIEIYKKLRATETIEQLMDIKDELLDRFNDYPSEVEQLLDS
VEIKVHLLHVGVQTVKDTGKTIEILLTQKGTNDIDGEALFKNTIALGRSMKVGVQEGCMK
VTLTKSNQWLESLKFLSKTLEESLRIPDEV
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcaattattaatgaaattataaatagagatacaagatttaaagatttgtccgag
caagtcggacatgccaatttattagtcacagggttaacacctgcagcaaaagcgtctatc
atagctgaactttaccaatcagaccatcgccaagttttattagtgacaaataatttatat
caagcggataaattagaagcggatctccttcaatctgtaccagatgacgaaatttataaa
tatcccgtgcaagatattatgattgaagaattttctacgcaaagtccagatttaatgagt
gagcgtgttcgaacacttacggcacttgcgaatgaacgtcgcggactttacattgttcct
ttaaatggtctgaaaaagttattaacgccaaaagcactatggcaagaacatcaactctca
ttggaagttggtaacgatattgatgttgatctatttctagataaacttgtaaacatgggc
tatcgccgtgaaacagtcgtttcaaatattggagaattttcagtacgcggtggcattatt
gatatttatccattgctaggtgaaccgttgcgtatcgaattatttgatacagaggtggat
tcaatccgtcaatttgatgtcgaatctcaacgctcttctgaaaatgtggaaatagcagag
atcacgacagcgcatgattatattatgacggatgcggttcgtcaaagaatgatggaaggc
ttaaaacaagcttatgaaacgacacgccctaaaatagagaagtctgtgcgtcaagattta
aaagatacgtatgagcgttttaatcttttagaagatacgcattttgatccacaaatatta
cgtcgtcttatcgcttggatgtatgaaacaccgacaaccatcttagattatttcaaagac
aacgcgattgttttagtagatgagtataatcgtgtaagagaaacggaagaaacgttgact
actgagacagaagcatttcttcaaaatttaatcgaaagtggtaaaggctttataggtcaa
cgctttatggaagatgacacttttgatcgtatgttccgtcaatttaaaattactttcttt
acactgtttactgcctcaatgcctatgaaattagaccatatcgtcaagttctcatgtaag
cctgtacaacaattttatggccaatacgatatcatggcttcagaatttcaacgttacatg
aaacaaggtgaccgtatggtggtcatggtcgaaacagaaacaaaaaaagaaagaattcat
gcaatgttgagtgaaatgcatgtgcctacactactcgaacctgaagatgatgctatggag
cccggtcatgctgcgattattcaaggcagtctatccgaaggctttgaattgccttacatg
tccatggtagtcgtgactgaaagagagttatttaaatcgaagcaaaaaaagacgtctaaa
aaacgtcgtaaaacgatgagtaatgctgaaaaaatcaagtcataccaagaattgaacgtt
ggcgattatgttgtccatgttcatcacggtgtaggacgttacttaggtgttgaaacgtta
gaagttggagaagtccaccgtgactatattaagatacagtaccaaggcacagatcaactg
tacgtacctgttgatcaaatggaacaagtgcaaaaatatgttggttctgaagataaaacg
ccgaaactatataaattaggcggtagtgaatggaagaaaacgaaagctaaagttcaaagt
agtgtcgaagatattgccgacgaattaattgacttatataaagagcgtgagcaatctgta
gggtatgcttttgggccggatacagaggaacaacatgcttttgaaatggacttcccatat
gatttaacggatgaccaagcgaaatcgattttagagattaaagaagatatggaaagtcag
cgccctatggatcgacttctctgtggagatgtcggctatggtaaaactgaggtcgccgtg
cgcgcagcgtttaaagcggtcatgtcaggtaagcaagttgcatttttagtgccaaccact
atactcgcgcaacaacattatgagacattaatcgaacgtatgcgagattttccagtcgaa
attcacttaatgagccgttttagaacacctaaagaaattcgtgaaacaaaagaaggctta
aagtccggttttgttgatattgtagtaggcacgcataaacttttaggaaaagctgtggaa
tacaaaaatttaggattgttgattgtcgatgaagaacaacgttttggtgtatgtcataag
gaaaaaatcaagacattgaaagcgaatgtcgacgtattaactttaacagcgacccctata
ccaagaacattgcacatgagtatgttaggtgtgcgtgatttatctgtaatagagacaccg
ccggaaaatcgttttccagttcaaacttatgtattagagcaaaatacgaactttattaaa
gaagcactcgagcgagagttatcgcgtgggggccaagtgttctatttgtataaccgtgtc
caatctatttatgaaaaacgtgagcaattacaaatgttaatgccagatgcatctattggt
gtggcacacggacagttacctgaacgcgatttagaagagacaatgctcgattttattaat
ggtgaatatgatattttagttacgaccacgattattgaaaccggcgtagatgtccctaat
gccaacacattgattattgaagatgctgaccgttttggtttaagtcaattgtatcaatta
cgtggtcgcgtgggtcgttcgagtcgaattggctatgcctacttcctccatgcgacaaat
aaagtgttgaatgaaacggctgaggacagattacaagcgataaaagagttcacagagcta
ggcagtggctttaaaattgcgatgcgtgatttaaacatacgaggtgctggaaacttatta
ggtaagcaacaacatggatttattgattctgtcggttttgatctttattcacaaatgtta
gaagaagcggtgaatgaaaaacgaggtatcaaagaagaaacagtagcacctgaaattgag
atgaacttacgtttagacgcttatttgcctgccgaatatattcgtaatgagcaagctaaa
atagaaatttataaaaaattacgtgcgactgaaacgatagaacaactcatggatattaaa
gatgaattgttagatcgcttcaacgattatccgagtgaagttgaacaattgctcgattcc
gttgaaattaaagttcatttactgcacgtaggtgtgcaaacggtaaaagataccggaaaa
accattgaaattttattaacacaaaaaggcacaaacgatattgatggtgaagcgttgttt
aaaaatacaattgcgttaggacgaagcatgaaagtcggtgtacaagaaggttgcatgaaa
gtgacgctgacaaaaagtaatcaatggttagagtcattgaagtttttgtctaagacactc
gaagaaagtttgagaataccagatgaagtctaa
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