Sporothrix schenckii: SPSK_00678
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Entry
SPSK_00678 CDS
T05555
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ssck
Sporothrix schenckii
Pathway
ssck03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPSK_00678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssck03041
]
SPSK_00678
Enzymes [BR:
ssck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPSK_00678
Spliceosome [BR:
ssck03041
]
Complex C
Other components
Step II factors
SPSK_00678
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
ResIII
nSTAND3
T2SSE
SLFN-g3_helicase
ATPase
SRP54
AAA_16
Myosin_head
Motif
Other DBs
NCBI-GeneID:
27662905
NCBI-ProteinID:
XP_016584371
UniProt:
A0A0F2LYW5
LinkDB
All DBs
Position
Unknown
AA seq
1118 aa
AA seq
DB search
MDRDYGRYRERDRGGRDYDRDRGGRDHDRDRDFRGHHDRDSRDSRDGGGRGRDGDRDRDR
DRDVGYGGDRNDWNDRSDRNGRNESDPHFKRRRLNFNRSVRDDGGGGGGGSSSRNGRFDR
GRPPRDDYSSRSATPRGDRNRRDATPTQEEFGATGEEGVSAEDEKALDRDWYTGDEFGHT
FGDEDHNPFGSYDDTSWADKERQEQQMLEKKTGRFDRVNPRTLQKQKDVDAWETNRMLTS
GVAQRRDMGADFGDDEEATRVHLLVHNLRPPFLDGKTIFTKQLEPVPAVRDFQSDMAVFS
RKGSKVVRERRQQRERQRAAKDATNAAGTTLGNLMGVRGDNDDDSALPLAGEEEEAKKSK
SGAHPDAAGAKGSNKFAEHMKKNEGASSFSQSKSLREQREYLPAFAVREDLMRVIRDNQV
IIVVGETGSGKTTQLTQFLYEDGYGHVGMIGCTQPRRVAAMSVAKRVSEEMEVKLGSTVG
YAIRFEDCTSKDTVIKYVTDGVLLRESLNEPDLDRYSCIIMDEAHERALNTDVLLGLFKK
ILQRRRDIKLIVTSATMNSKRFADFFGGAPEFVIPGRTFPVDVMFHRTPVEDYVDQAVQQ
VLAIHVSMGPGDILVFMTGQEDVEVTCELVRERLDTLKDPPKLSILPMYSQMPADLQAKI
FDKAAPGVRKCIVATNIAETSLTVDGIMYVVDPGYSKLKVYNPRMGMDTLQITPISQANS
SQRSGRAGRTGPGKAFRLFTEKAFKDELYLQTIPEIQRTNLSNTILLIKSLGVKDLLDFD
FMDPPPQDTITTSLFDLWALGSLDNLGELTSLGRKMNAFPMDPPLAKLLIMAETYRCSEE
MVTIVSMLSVPNVFYRPKERQEESDAAREKFFVPESDHLTYLHVYTQWKANGYLDSWCTR
HFLHAKSLRRAKEVREQLVDIMKMQKMPMTSCGTDWDVLRKCICSGYYHQAAKVRGIGEY
INLRTSVTVQLHPTSALYGLGFLPDYVVYHELILTSKEYMSTVTAVDPRWLAELGGVFYS
VKEKGYSAREKRVIETDFNRRMEIESQMARDKLRQDEQRRAEAEREARAVQQSADAGSGT
IIGGGSGAHSGAGGAAAKKIVVHGAVRKPVAKKRGRGF
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atggatcgggactacggacgctaccgcgagagggaccgcggcggacgggactacgaccgc
gaccgtggcggcagagatcacgatcgagaccgtgactttcgcggccaccacgacagagac
agccgagacagccgagatggaggaggcagaggccgcgacggcgatcgggatcgggaccga
gaccgggatgtgggttacggcggagatcgaaacgactggaacgaccgctctgatcgcaac
ggccgtaatgaatccgatccgcacttcaagcggcgcaggctcaacttcaaccgatccgtt
cgagacgacggtggcggtggcggcggcggcagcagcagcagaaatggccgtttcgatcgg
ggacggccaccacgagatgactacagcagccggtcggcgacaccaaggggcgaccgcaac
cggcgcgacgcgacacccacacaagaagagtttggcgccacgggcgaggaaggtgtctcg
gccgaggacgagaaggcactggaccgcgactggtacacgggcgacgagttcgggcacacc
tttggcgacgaagaccacaacccgtttgggtcctacgacgacacctcgtgggcggacaag
gaacgccaggagcagcagatgctcgagaagaagacgggccgtttcgaccgcgtgaaccca
cgaacactacagaagcaaaaggatgtcgacgcctgggagacgaaccgcatgctgacgagc
ggcgttgcgcagcggcgggacatgggtgccgactttggcgacgacgaagaggcgacgcgc
gtgcacctgttggtgcacaacctgcggccgccgttcctggacggcaagaccatctttacg
aagcagcttgagcccgtgccggccgtgcgcgacttccagagcgacatggccgtcttcagt
cgaaagggcagcaaggtcgtgcgcgagcggcgacagcagcgcgagcggcagcgcgcggca
aaggacgcgacgaacgcggcaggcacgacgctcggcaacctgatgggcgtgcggggcgac
aacgacgacgacagcgcgctgcccctggccggcgaggaggaagaggcgaagaagagcaag
tcgggtgcccaccccgacgccgccggcgcaaagggaagcaacaagttcgcggagcacatg
aagaagaacgagggcgccagctcgttcagccagagcaagagcctgcgcgagcagcgcgag
tacctgccggcgtttgcggtgcgcgaggacctgatgcgcgtcatccgcgacaaccaggtc
attatcgtcgtgggcgagacgggctcgggcaagacgacgcagctgacgcagtttctgtac
gaagacggctacggccacgtgggcatgatcgggtgcacgcagccgcggcgtgtggcggcg
atgagcgtggccaagcgcgtcagcgaggagatggaggtcaagctcggcagcacggtgggc
tacgcgatccgcttcgaggactgcacgagcaaggacaccgtcatcaagtacgtgacggac
ggcgtgctgctgcgcgagtcgctcaacgagcccgacctcgaccgctactcgtgcatcatc
atggacgaggcgcacgagcgcgcgctcaacacggacgtgctgctgggcctgttcaagaag
atcctgcagcggcgccgcgacatcaagctgattgtgacgtccgccaccatgaactcgaag
cgcttcgccgacttctttggcggcgcgcccgagtttgtcatccccggccgcacgttcccc
gtggacgtcatgttccaccgcacgcccgtcgaggactacgtcgaccaggcggtccagcag
gttctggcgatccacgtgtccatgggccccggcgacattctcgtcttcatgacgggccag
gaggacgtcgaggtcacgtgcgagctggtgcgcgagcgcctcgacacgctcaaggacccg
cccaagctgagcatcctgcccatgtacagccagatgccggcggacctgcaggccaagatc
tttgacaaggccgcgccgggcgtgcgcaagtgcatcgtggccaccaacattgccgagacc
agcctgacggtcgacggcatcatgtacgtcgtggaccccggctactccaagctcaaggtg
tacaacccgcgcatgggcatggacacgctgcagatcacgccaatctcgcaggccaactcg
tcgcagcggtccgggcgcgccggccgcacagggcccggcaaggcgttccgcctgtttacg
gaaaaggccttcaaggacgagctgtacctgcagaccatccccgagatccagcgcaccaac
ctcagcaacacgatcctgctgatcaagtcgctgggcgtcaaggacctgctcgactttgat
ttcatggacccgccgccccaggacaccatcacgacgtcgctgttcgacctgtgggcgctc
ggctcgctcgacaacctgggcgagctgaccagcctcggccgcaagatgaacgcgttcccc
atggacccgccgctggccaagctgctcatcatggccgagacgtaccgctgcagcgaggag
atggtcacgatcgtgtcgatgctgtcggtgcccaacgtcttttaccggcccaaggagcgc
caggaggagtcggatgcggcgcgcgaaaagttttttgtgcccgagtccgaccacctgacg
tacctgcacgtctacacccagtggaaggccaacggctacctcgacagctggtgcacgcgc
cactttttgcacgccaagtcgctgcgccgcgccaaggaggtccgcgagcagctcgtcgac
attatgaagatgcaaaagatgcccatgaccagctgcggcaccgactgggacgtcctccgc
aagtgcatctgctccgggtactaccaccaggccgccaaggtccgcggcatcggcgagtac
atcaatctgcgcaccagcgtcaccgtgcagctgcacccgaccagcgcactctacggactg
ggcttcctgcccgactacgtcgtctaccacgagctgattctgacgtccaaggaatacatg
tccaccgtcaccgccgtcgacccgcgctggctggccgagctgggcggcgtgttctactcg
gtcaaggaaaagggctactcggcgcgcgagaagcgcgtcatcgagacggactttaaccgg
cgcatggagatcgagtcgcagatggcgcgcgacaagctgcggcaggacgagcagcggcgc
gccgaggccgagcgcgaggcgcgggctgtgcagcagagcgccgacgctggcagcggcacc
atcatcggcggcggcagcggtgcccatagcggcgccggtggtgcggcggccaagaagatt
gtcgtgcacggcgctgtgcgcaaacctgtggcgaaaaagcgcggacgcggtttctag
DBGET
integrated database retrieval system
