Sporothrix schenckii: SPSK_01268
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Entry
SPSK_01268 CDS
T05555
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ssck
Sporothrix schenckii
Pathway
ssck03018
RNA degradation
ssck03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPSK_01268
09123 Folding, sorting and degradation
03018 RNA degradation
SPSK_01268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_01268
03041 Spliceosome [BR:
ssck03041
]
SPSK_01268
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPSK_01268
mRNA degradation factors
5'-3' decay
Lsm complex
SPSK_01268
Spliceosome [BR:
ssck03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
SPSK_01268
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
CAF20
SAP18
SM-ATX
API5
Motif
Other DBs
NCBI-GeneID:
27663475
NCBI-ProteinID:
XP_016584033
UniProt:
A0A0F2LV67
LinkDB
All DBs
Position
Unknown
AA seq
159 aa
AA seq
DB search
MVCPSSPLLLCAPLLTISPQLPLGLLSAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLK
EVVQTNADGDSFMRIPEVYVKGNNIKYLRVPDEIIDTVKEQQQQQQQQHQHHYQSNFRGG
SRGGNNNGGHPRGDGQGGRGRGDRGRGGSRGGRGRGRGD
NT seq
480 nt
NT seq
+upstream
nt +downstream
nt
atggtatgcccatcgtcccctctccttctttgcgcacccttgctgaccatctcgccacag
ctacccctcggcctcctcagtgccgcacagggccatccgatgctggtcgagctcaagaac
ggcgagaccctcaacggccaccttgtgcagtgcgacacgtggatgaacctcaccctcaag
gaggttgtgcagacgaacgccgacggcgacagctttatgcgcatacccgaagtctacgta
aaaggcaacaatatcaagtacctccgcgtccccgacgagattatcgacaccgttaaagaa
cagcagcagcagcagcaacaacaacaccagcatcactaccaatcgaacttccgtggcggc
agccgcggcggcaacaacaacggtggccatccgcgcggcgacggccagggcggacgcggc
cggggcgaccgcggtcgcggcggttcacggggaggccggggccgaggccgtggtgactag
DBGET
integrated database retrieval system
