Sporothrix schenckii: SPSK_01409
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Entry
SPSK_01409 CDS
T05555
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ssck
Sporothrix schenckii
Pathway
ssck03008
Ribosome biogenesis in eukaryotes
ssck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SPSK_01409
09123 Folding, sorting and degradation
03018 RNA degradation
SPSK_01409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssck03021
]
SPSK_01409
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_01409
03009 Ribosome biogenesis [BR:
ssck03009
]
SPSK_01409
03016 Transfer RNA biogenesis [BR:
ssck03016
]
SPSK_01409
Transcription machinery [BR:
ssck03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
SPSK_01409
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
SPSK_01409
Ribosome biogenesis [BR:
ssck03009
]
Eukaryotic type
Pre-60S particles
RNases
SPSK_01409
Transfer RNA biogenesis [BR:
ssck03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
SPSK_01409
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Cas_Cas1
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
27663601
NCBI-ProteinID:
XP_016590071
LinkDB
All DBs
Position
Unknown
AA seq
1044 aa
AA seq
DB search
MGIPAAFRWLSSKYPKIISPVVEETPKEMDDGVVIPVDTTGPNPNGDEFDNLYLDMNGIV
HPCSHPEDRPPPADEEEMMLEIFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRSRRF
RSAQEAKEKEEDKEELLKLLKQQNGGSLSEASLEVVSKKAFDSNSITPGTPFMDILAASL
RYWCAYKLNTDPGWSKMKIIISDASVPGEGEHKIMDFVRAQRASPNHDPNTRHVIYGLDA
DLIMLSLATHEPYFRVLREDVFFQDSKARLCKLCGQKGHEASACRGQAKEKDGEFDEKDT
SHTQKPFIWLHVSVLREYLAVELDVPNLPFRWDLERAIDDWIFLCCFVGNDFLPHLPALE
IRENGINTLTALWKENLPLMNGYITKDGHVDLRRAQVIMSGLAKQEDSIFRRRKQQEDRR
EENNKRRKLHQEQGKNRNDTRNTARSLGGDSVFAEGTAGLNLRPIATFTPETSKTITHDV
VVNGRPATDANVANKSAASVLKSRMQNRTAQTTTNTNDTAASTNEKDADQRTALGKRKAD
DIEDSVKSTPQSSETSTPATKLPVEGSVDTVRMWEEGYADRYYEQKFQVDPKDIEFRHGV
ARAYVEGLAWVLLYYFQGCPSWEWYYPYHYAPFAADFVDLSRLELHFEKGRISKPFEQLM
SVLPAASRHAIPEVFHDLMLNEDSEIIDFYPEEFDLDLNGKKFAWQGVALLPFIDMARLL
AAIEKRYPLLSPADKIRNGIGKIVMLLSDADTALYDEVTSNFYSKRQGPLKYKLDPLVSG
GIAGNIEKIDDYIPHGSLTYPLERKALPDIEYDRSLSVNFELLSTPHEHKSMLLRGVKLP
TPVINRGDKEALLNNRSGRNHGGGPHNSYHSNSNNGRPWHDSGGRHQHNNYGGHQNGRDH
PPYHPGNGQSGRGSYHGASYQSWAPPVPGQAGFGSGRPPPPPSSTPMNFGRYNDGDYNNG
GYSGRGGRYVGGYDNGGYGGGSYGNDSHNQGYQNRYDLPPPPGSYNQQSYGQQSYRPPPG
RGQRPRASDNRSEGYSNSRGGYRR
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgggtatcccggctgcgttccgatggctctcgagcaaatacccgaagatcatctccccg
gtggtagaagaaacaccgaaagaaatggacgacggtgtcgtcatacccgtcgatacaacg
gggccgaacccgaacggggatgaattcgacaacctgtatttggacatgaacggcatcgtg
cacccttgctctcatccggaagaccgccccccgccagcagatgaagaggagatgatgttg
gaaattttcaaatacacagaccgggtcgtcaatatggtccggccccgcaagttgttgatg
attgccgtcgacggtgttgcacctcgcgccaagatgaatcagcagcgctcgcgtcgtttt
cggtccgcccaggaggcaaaggaaaaggaagaggacaaggaggagcttttgaaactactg
aaacagcaaaacggtggtagcctgtctgaagcgtctctcgaagtcgtgtcaaaaaaggcg
ttcgactcgaactctatcacaccgggtacccctttcatggacattttggctgccagccta
cgatactggtgcgcctacaagctgaacacagatccgggttggtccaagatgaaaatcatc
atctcggatgcaagcgtgccaggtgagggtgagcacaaaattatggactttgttcgcgct
caacgggcgtcacccaaccacgatccaaatactcgtcatgtcatctatgggttggatgcg
gatctcatcatgctaagtctcgccacacatgagccgtactttcgagttttacgggaggac
gtatttttccaggacagcaaggcgcgtctttgcaaactttgtggacaaaagggccatgaa
gcaagcgcatgcaggggccaggcgaaggaaaaagatggcgagtttgacgaaaaagacacc
tcacacactcagaagccattcatctggcttcatgtatctgttttgcgagaatatctcgct
gtcgaacttgatgttcccaatcttcctttccgatgggatttggagcgtgccattgacgac
tggattttcttgtgctgtttcgtgggcaatgatttccttcctcatcttcctgcgcttgaa
atccgcgagaacggcattaatacactgacggcgctttggaaagagaacttaccgctcatg
aacggctatattacaaaagacgggcatgtcgatttgagacgcgctcaagtcatcatgagc
ggacttgccaaacaggaggacagtattttccggcgcagaaaacaacaagaagatcgaaga
gaagaaaacaacaaacgacgcaaacttcaccaagaacaagggaagaaccgcaacgacact
cgtaacactgcccgaagcttggggggtgatagtgtctttgcagagggcaccgccggcttg
aatttgcgccctattgctactttcacacccgaaacctcaaagactattactcacgacgtg
gtcgtgaacggtagaccagcaaccgatgcgaacgtagcgaacaaaagcgccgccagcgtt
ctgaagagccgcatgcaaaatcgtaccgcgcaaactacgaccaatacaaacgataccgcc
gcatctacaaatgagaaagacgcagatcaacggaccgcccttggtaaacgcaaggccgat
gacattgaagatagcgtcaagagcactccacaatccagtgagacgagtacgccggccacg
aagctgcctgtggaagggtctgtggatactgttcggatgtgggaagaaggatatgcagac
cgttactacgaacagaagtttcaggtcgacccaaaagacatcgagttccgccacggtgtt
gctcgcgcctatgtggaaggcctagcctgggttcttttgtactatttccagggatgcccg
tcttgggaatggtactatccctatcattacgcaccattcgctgccgactttgtggatctg
tccaggctggagcttcacttcgagaagggccgcatctcgaaaccattcgagcaactcatg
agcgttcttccagcagcctctcgccatgccatccctgaagtttttcacgacctcatgctg
aacgaagacagcgaaatcatcgatttctatccagaagaattcgacctcgatctcaatggc
aaaaagtttgcatggcagggggtagcactactacctttcattgacatggcacgtttactt
gctgccatagaaaaacggtacccgcttctaagtcctgcagacaaaatccgtaacggtatt
ggcaagattgttatgctgctgtctgacgcagacacggcgttatacgacgaggtgacttca
aatttctactcgaaacgacaaggaccactcaagtacaagctggatcctctggtatctggc
ggaatcgccggaaacatcgagaaaatagatgattatatcccacacggctcattgacctac
ccgttggagcgaaaggcccttcccgacattgaatatgacagatctttaagtgtcaacttt
gaactgctgtccacgccacacgagcacaagtccatgctcctacgcggggttaagcttcca
acgcccgttatcaaccgcggcgacaaggaggcattgctcaacaataggtctggccgtaat
catggaggcgggccgcacaatagctaccatagcaatagcaacaatggccggccgtggcat
gattcgggcggaagacaccagcacaacaattatggcggccaccagaacggtcgtgatcac
ccaccgtatcacccggggaacggccagagcggacgaggctcatatcatggagcgtcatat
caatcttgggcccccccagtacccggccaagccgggtttggttctggtcggccccctcca
ccgccttcatcaacccctatgaactttgggaggtacaatgacggtgattacaataatggt
ggctacagtggtcgtggaggcagatatgtgggtggttacgacaatggaggttacggcggc
ggtagttacggtaacgacagccacaaccaaggttaccaaaatcgctacgacttaccccca
ccacctggaagctacaatcagcagtcctatgggcagcagtcatatcgccctcctcctggc
cggggccaacggccaagggcgagtgacaaccgctccgagggttacagcaactctcgcggc
ggctaccgtaggtga
DBGET
integrated database retrieval system
