KEGG   Sporothrix schenckii: SPSK_01779
Entry
SPSK_01779        CDS       T05555                                 
Name
(RefSeq) exosome complex component RRP42
  KO
K12589  exosome complex component RRP42
Organism
ssck  Sporothrix schenckii
Pathway
ssck03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssck00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPSK_01779
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssck03019]
    SPSK_01779
Messenger RNA biogenesis [BR:ssck03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     SPSK_01779
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     SPSK_01779
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 27663959
NCBI-ProteinID: XP_016589671
UniProt: A0A0F2MDT9
LinkDB
Position
Unknown
AA seq 410 aa
MATTQHVLLSPAELAFLHTSLAQQPPIRPDGRTPAQFRPLRAETGMLPGANGSARICFSD
GTEAIVGVKAQVERTRRGEGGVGDGDDEEEEEEDGLWADADDDDGGDGEGTKGGAKNGGS
GGGSGGNASPSWVEVTVEIPGVRDDDASTVFLGALLAEALLADGGLTKALRINRRFHWKL
FLDVLLISPPLSYPLPLLSLTTHLALLATRLPRLVSEGDEDPFFDDDWDASTFLYAQEQT
SQSDSAAASTSTQSTQSRPPITLLVMTVGDNILFDPTAEELAVANAVLAVSVGRVASSSS
SSSSSSSSSSLRLLAIRTIDPPSRLTAPGSPYDPDANKPKATPTPTAQQDGKPPAATARL
ASETEDVYGVWRAPRGGAKVALLAAMTHKVLQKGGVADEVFAGLDGVEIV
NT seq 1233 nt   +upstreamnt  +downstreamnt
atggccacgacgcagcacgtgctgctgtcgcccgccgagctggcattcctccatacatcg
ctggcgcaacaaccaccaatccgccccgatgggcgcacacccgcacagttccgtcccctg
cgcgccgagacgggcatgctccctggcgcgaatggcagtgctcgcatatgcttttccgat
gggacagaagccattgtcggcgtcaaggcacaggtcgaacgcacaagacgaggcgagggc
ggcgtgggcgatggcgatgacgaagaggaggaggaggaagacggcttgtgggccgacgcc
gacgacgacgacggcggcgacggcgaaggcacaaaagggggcgctaagaacggaggtagc
ggtggtggctcgggcggcaatgcgtcgccgtcgtgggtcgaggtgacggtcgagattcca
ggcgtgcgcgacgacgacgcgagcacggtctttctgggcgctcttctggccgaggcgctg
ctggcggacggtgggctcacaaaagcactgcgcatcaaccggcggttccactggaagctg
tttctggacgtgctgctgatctcgccgccgctgtcctacccgctgcccctgctgtcgctg
acgacgcatctggcgctcctggcgacgcggctgccccggctggtgtcggagggcgacgag
gacccgttctttgacgacgactgggatgcatcgacattcctatacgcacaggagcaaacc
tcccagtcagatagcgcggcggcatcaacatcaacacagtcaacacagtctcggccaccc
attacgctgctcgtcatgaccgtcggcgacaacattctttttgaccccacggcggaggag
ctggctgtggccaatgctgtgctggccgtctcggtcggccgagtggcttcttcgtcttct
tcttcctcttcctcctcctcctcctcttccctccgtctgcttgccattcgcaccattgac
ccgccttctcggctcacggctcccggatcaccatacgaccccgacgcgaacaagcccaag
gcaacaccaacaccaacggcacaacaagacggcaaaccgcccgctgccacggctcgcctg
gcctcggagacggaagacgtctatggcgtatggcgggcaccccgtggcggtgccaaagtg
gccctgctggcggccatgacgcacaaggtcctgcaaaaaggaggcgtggctgacgaggtc
tttgcaggcctggacggcgtcgagattgtatag

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