Sporothrix schenckii: SPSK_01779
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Entry
SPSK_01779 CDS
T05555
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
ssck
Sporothrix schenckii
Pathway
ssck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSK_01779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_01779
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SPSK_01779
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
SPSK_01779
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
27663959
NCBI-ProteinID:
XP_016589671
UniProt:
A0A0F2MDT9
LinkDB
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Position
Unknown
AA seq
410 aa
AA seq
DB search
MATTQHVLLSPAELAFLHTSLAQQPPIRPDGRTPAQFRPLRAETGMLPGANGSARICFSD
GTEAIVGVKAQVERTRRGEGGVGDGDDEEEEEEDGLWADADDDDGGDGEGTKGGAKNGGS
GGGSGGNASPSWVEVTVEIPGVRDDDASTVFLGALLAEALLADGGLTKALRINRRFHWKL
FLDVLLISPPLSYPLPLLSLTTHLALLATRLPRLVSEGDEDPFFDDDWDASTFLYAQEQT
SQSDSAAASTSTQSTQSRPPITLLVMTVGDNILFDPTAEELAVANAVLAVSVGRVASSSS
SSSSSSSSSSLRLLAIRTIDPPSRLTAPGSPYDPDANKPKATPTPTAQQDGKPPAATARL
ASETEDVYGVWRAPRGGAKVALLAAMTHKVLQKGGVADEVFAGLDGVEIV
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggccacgacgcagcacgtgctgctgtcgcccgccgagctggcattcctccatacatcg
ctggcgcaacaaccaccaatccgccccgatgggcgcacacccgcacagttccgtcccctg
cgcgccgagacgggcatgctccctggcgcgaatggcagtgctcgcatatgcttttccgat
gggacagaagccattgtcggcgtcaaggcacaggtcgaacgcacaagacgaggcgagggc
ggcgtgggcgatggcgatgacgaagaggaggaggaggaagacggcttgtgggccgacgcc
gacgacgacgacggcggcgacggcgaaggcacaaaagggggcgctaagaacggaggtagc
ggtggtggctcgggcggcaatgcgtcgccgtcgtgggtcgaggtgacggtcgagattcca
ggcgtgcgcgacgacgacgcgagcacggtctttctgggcgctcttctggccgaggcgctg
ctggcggacggtgggctcacaaaagcactgcgcatcaaccggcggttccactggaagctg
tttctggacgtgctgctgatctcgccgccgctgtcctacccgctgcccctgctgtcgctg
acgacgcatctggcgctcctggcgacgcggctgccccggctggtgtcggagggcgacgag
gacccgttctttgacgacgactgggatgcatcgacattcctatacgcacaggagcaaacc
tcccagtcagatagcgcggcggcatcaacatcaacacagtcaacacagtctcggccaccc
attacgctgctcgtcatgaccgtcggcgacaacattctttttgaccccacggcggaggag
ctggctgtggccaatgctgtgctggccgtctcggtcggccgagtggcttcttcgtcttct
tcttcctcttcctcctcctcctcctcttccctccgtctgcttgccattcgcaccattgac
ccgccttctcggctcacggctcccggatcaccatacgaccccgacgcgaacaagcccaag
gcaacaccaacaccaacggcacaacaagacggcaaaccgcccgctgccacggctcgcctg
gcctcggagacggaagacgtctatggcgtatggcgggcaccccgtggcggtgccaaagtg
gccctgctggcggccatgacgcacaaggtcctgcaaaaaggaggcgtggctgacgaggtc
tttgcaggcctggacggcgtcgagattgtatag
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