Sporothrix schenckii: SPSK_02316
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Entry
SPSK_02316 CDS
T05555
Name
(RefSeq) polyadenylation factor subunit 2
KO
K15542
polyadenylation factor subunit 2
Organism
ssck
Sporothrix schenckii
Pathway
ssck03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SPSK_02316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_02316
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
SPSK_02316
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Gbeta
EIF3I
WDR55
Beta-prop_TEP1_2nd
DSE1_N
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
ASA1
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_NOL10_N
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_WDR41
CFAP251_N
Beta-prop_WDR11_2nd
PEP5_VPS11_N
Beta-prop_WDR35_TULP_N
Nucleoporin_N
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
27664465
NCBI-ProteinID:
XP_016589146
LinkDB
All DBs
Position
Unknown
AA seq
673 aa
AA seq
DB search
MAYDPRGDYGGGGGGGGGGGGRYGQDGGRYGGQDGGRFGGQDGEGFVRVRGRRPVTDYGA
SLVHWMRHRHPKYRNAYGGESERPSVSYIVDMLPPVARITNAADTVPTRHLHSSLNKIKH
PVNVVRWTPEGRRLLTASSSGEFTLWNGTGFNFETIMQAHDSAIRALAYSYSDDWLISAD
HDGNIKYWQPNFNNVENLSAHTDPIRDLAFAPTDAKFVTASDDSTLKIYDFAAARPEATL
TGHGWDAKTCDWHPTKGLVVSGSKDHLVKLWDPRSGRCLTTLHGHKNTITKTSFERVHGW
CLATAARDQTARVFDLRTMRDICLLRGHDKDVSTLAWHPVHGNLLSTGGGDGALFHYLLD
EPNTPPGQAVTVAPYDSPDPSTAPAQSIYPAHRVPYAHDFAIWSLDWHPLGHILVSGSND
RVTRFWTRARPGEDVSRDRYHIGEAAAEAQGTWDRRGNRRQRQEEEEQEMEDEAEGLVDQ
KMPLKQQQAAAAAAAAAAADAAAHGGGAVPPPPMLPGLSLPGLGGATSGRGGAGLGMIPP
PPPPPPPGVLAAGGALPPLIPGVDMKNPPDPATMLELMKKAGFQLPPPPPGSHFPPIPPP
PLPAGVGGMVPPPPPPPGFQGALPGLGGGGIPGIPGLPGLGAEQQGQRNRAPLPSQADSL
REEQKRGQYTQRR
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacgatccacgaggggactacggcggtggcggcggcggcggtggtggtggtgga
ggtcggtatggccaggacggcggccggtacggaggccaagatggagggcggtttggcggc
caggacggcgaaggctttgtcagagttcggggacggcgacccgtgaccgattacggcgca
agcctggtgcattggatgcgccatcgacatcccaagtaccgcaatgcatacggcggcgag
tccgagcggccgagcgtgagctacattgttgacatgctcccaccagtggctcgtattacg
aatgccgccgataccgttcccacacgccacctacactcgtctctcaacaagatcaagcac
cccgtcaacgtcgtgcgctggacacccgagggccgccgcctgctgaccgcctcgagcagc
ggcgagttcacgctctggaacggcacgggattcaactttgagaccatcatgcaggcccac
gactcggccatccgcgcgctcgcgtactcgtacagcgacgactggctcatatcggccgac
cacgacggcaacatcaagtactggcagcccaacttcaacaacgtcgagaacctgtcggca
cacaccgacccgattcgcgacctggcgtttgccccgaccgatgccaagtttgtcacggcg
tcggacgactccacgctgaaaatctacgactttgccgccgcgcggcccgaggcgacactg
accggtcacggctgggacgccaagacgtgcgactggcacccgaccaagggcctggtggtg
tcgggctccaaagaccatctggtcaagctctgggacccgcggtccggccggtgcctgacg
acgctgcacggccacaaaaacaccattacgaaaacgtcgtttgagcgcgtgcacggctgg
tgcctcgccacggcggcgcgggaccagacggcgcgcgtctttgacctgcgcaccatgcgc
gacatttgcttgctgcgcggccacgacaaggacgtgtcgaccctggcgtggcacccggtc
cacggcaacctgctgagcacggggggcggcgacggcgcgctgttccactacctgctcgac
gagccaaacaccccgccgggccaggccgtcaccgtcgcgccgtacgacagccccgacccc
tcgaccgcccccgcccagagcatctacccggcccaccgcgtgccctacgcgcacgatttt
gccatctggtcgctcgactggcacccgctgggccacattctggtgtccggctccaacgac
cgcgtcacgcggttctggacgcgcgcgcggccgggcgaagacgtgtcgcgcgaccggtac
cacattggcgaggcggccgccgaggcgcagggtacatgggaccggcggggcaaccggcga
cagcggcaggaagaggaggagcaggagatggaggacgaggccgagggtcttgtcgaccaa
aaaatgccgctcaaacagcagcaggcggcggccgccgccgccgccgccgctgcagcagac
gctgcagcacatggtggcggcgctgtgccaccaccaccgatgctgcccggtctgtcgctg
cccggcctcggtggtgcgaccagtggacgtggtggtgctggtctaggtatgatcccgccg
ccgccaccaccgccgccgccgggcgtcctggccgcgggtggggcactgccgccactgatt
ccgggcgtcgacatgaagaaccctcccgatccggcgacgatgctggagttgatgaagaag
gccggcttccagctgccaccgcccccaccaggaagccatttcccgcccattccaccaccg
ccactgccagcaggcgtaggtggcatggtcccgccgccgccgccgccacctggcttccag
ggggccctgccagggctgggtggtggcggcattcccggcattcccggtctgccgggtctc
ggtgccgagcagcagggccagcggaatcgtgcaccactgcccagccaagcagacagtctc
agggaagagcagaagcgggggcagtacacgcagcggcggtag
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