KEGG   Sporothrix schenckii: SPSK_02316
Entry
SPSK_02316        CDS       T05555                                 
Name
(RefSeq) polyadenylation factor subunit 2
  KO
K15542  polyadenylation factor subunit 2
Organism
ssck  Sporothrix schenckii
Pathway
ssck03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ssck00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SPSK_02316
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssck03019]
    SPSK_02316
Messenger RNA biogenesis [BR:ssck03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     SPSK_02316
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML_2 WD40_Gbeta EIF3I WDR55 Beta-prop_TEP1_2nd DSE1_N Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_Aladin Beta-prop_EIPR1 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th ASA1 Beta-prop_SCAP WD40_RFWD3 Beta-prop_NOL10_N Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR41 CFAP251_N Beta-prop_WDR11_2nd PEP5_VPS11_N Beta-prop_WDR35_TULP_N Nucleoporin_N Beta-prop_Vps41
Other DBs
NCBI-GeneID: 27664465
NCBI-ProteinID: XP_016589146
LinkDB
Position
Unknown
AA seq 673 aa
MAYDPRGDYGGGGGGGGGGGGRYGQDGGRYGGQDGGRFGGQDGEGFVRVRGRRPVTDYGA
SLVHWMRHRHPKYRNAYGGESERPSVSYIVDMLPPVARITNAADTVPTRHLHSSLNKIKH
PVNVVRWTPEGRRLLTASSSGEFTLWNGTGFNFETIMQAHDSAIRALAYSYSDDWLISAD
HDGNIKYWQPNFNNVENLSAHTDPIRDLAFAPTDAKFVTASDDSTLKIYDFAAARPEATL
TGHGWDAKTCDWHPTKGLVVSGSKDHLVKLWDPRSGRCLTTLHGHKNTITKTSFERVHGW
CLATAARDQTARVFDLRTMRDICLLRGHDKDVSTLAWHPVHGNLLSTGGGDGALFHYLLD
EPNTPPGQAVTVAPYDSPDPSTAPAQSIYPAHRVPYAHDFAIWSLDWHPLGHILVSGSND
RVTRFWTRARPGEDVSRDRYHIGEAAAEAQGTWDRRGNRRQRQEEEEQEMEDEAEGLVDQ
KMPLKQQQAAAAAAAAAAADAAAHGGGAVPPPPMLPGLSLPGLGGATSGRGGAGLGMIPP
PPPPPPPGVLAAGGALPPLIPGVDMKNPPDPATMLELMKKAGFQLPPPPPGSHFPPIPPP
PLPAGVGGMVPPPPPPPGFQGALPGLGGGGIPGIPGLPGLGAEQQGQRNRAPLPSQADSL
REEQKRGQYTQRR
NT seq 2022 nt   +upstreamnt  +downstreamnt
atggcgtacgatccacgaggggactacggcggtggcggcggcggcggtggtggtggtgga
ggtcggtatggccaggacggcggccggtacggaggccaagatggagggcggtttggcggc
caggacggcgaaggctttgtcagagttcggggacggcgacccgtgaccgattacggcgca
agcctggtgcattggatgcgccatcgacatcccaagtaccgcaatgcatacggcggcgag
tccgagcggccgagcgtgagctacattgttgacatgctcccaccagtggctcgtattacg
aatgccgccgataccgttcccacacgccacctacactcgtctctcaacaagatcaagcac
cccgtcaacgtcgtgcgctggacacccgagggccgccgcctgctgaccgcctcgagcagc
ggcgagttcacgctctggaacggcacgggattcaactttgagaccatcatgcaggcccac
gactcggccatccgcgcgctcgcgtactcgtacagcgacgactggctcatatcggccgac
cacgacggcaacatcaagtactggcagcccaacttcaacaacgtcgagaacctgtcggca
cacaccgacccgattcgcgacctggcgtttgccccgaccgatgccaagtttgtcacggcg
tcggacgactccacgctgaaaatctacgactttgccgccgcgcggcccgaggcgacactg
accggtcacggctgggacgccaagacgtgcgactggcacccgaccaagggcctggtggtg
tcgggctccaaagaccatctggtcaagctctgggacccgcggtccggccggtgcctgacg
acgctgcacggccacaaaaacaccattacgaaaacgtcgtttgagcgcgtgcacggctgg
tgcctcgccacggcggcgcgggaccagacggcgcgcgtctttgacctgcgcaccatgcgc
gacatttgcttgctgcgcggccacgacaaggacgtgtcgaccctggcgtggcacccggtc
cacggcaacctgctgagcacggggggcggcgacggcgcgctgttccactacctgctcgac
gagccaaacaccccgccgggccaggccgtcaccgtcgcgccgtacgacagccccgacccc
tcgaccgcccccgcccagagcatctacccggcccaccgcgtgccctacgcgcacgatttt
gccatctggtcgctcgactggcacccgctgggccacattctggtgtccggctccaacgac
cgcgtcacgcggttctggacgcgcgcgcggccgggcgaagacgtgtcgcgcgaccggtac
cacattggcgaggcggccgccgaggcgcagggtacatgggaccggcggggcaaccggcga
cagcggcaggaagaggaggagcaggagatggaggacgaggccgagggtcttgtcgaccaa
aaaatgccgctcaaacagcagcaggcggcggccgccgccgccgccgccgctgcagcagac
gctgcagcacatggtggcggcgctgtgccaccaccaccgatgctgcccggtctgtcgctg
cccggcctcggtggtgcgaccagtggacgtggtggtgctggtctaggtatgatcccgccg
ccgccaccaccgccgccgccgggcgtcctggccgcgggtggggcactgccgccactgatt
ccgggcgtcgacatgaagaaccctcccgatccggcgacgatgctggagttgatgaagaag
gccggcttccagctgccaccgcccccaccaggaagccatttcccgcccattccaccaccg
ccactgccagcaggcgtaggtggcatggtcccgccgccgccgccgccacctggcttccag
ggggccctgccagggctgggtggtggcggcattcccggcattcccggtctgccgggtctc
ggtgccgagcagcagggccagcggaatcgtgcaccactgcccagccaagcagacagtctc
agggaagagcagaagcgggggcagtacacgcagcggcggtag

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