KEGG   Sporothrix schenckii: SPSK_02565
Entry
SPSK_02565        CDS       T05555                                 
Name
(RefSeq) COMPASS component SWD2
  KO
K14962  COMPASS component SWD2
Organism
ssck  Sporothrix schenckii
Pathway
ssck03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ssck00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SPSK_02565
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssck03019]
    SPSK_02565
   03036 Chromosome and associated proteins [BR:ssck03036]
    SPSK_02565
Messenger RNA biogenesis [BR:ssck03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     SPSK_02565
Chromosome and associated proteins [BR:ssck03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     SPSK_02565
    COMPASS/SET1 complex (yeast)
     SPSK_02565
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st WDR55 Beta-prop_Vps41 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_TEP1_C NBCH_WD40
Other DBs
NCBI-GeneID: 27664711
NCBI-ProteinID: XP_016588846
UniProt: A0A0F2MBG0
LinkDB
Position
Unknown
AA seq 384 aa
MPAVPMDIDTPAAGAAGPSLSVSRALRDTATELSSIISSFRPTKLFARDAKDKSPTYILS
LDFDDPGELCMTSESDDTIQIYNVKGGRHDKALISKKYGAKLARFTHWSNSIVYASTKQN
DSIRYLATHDNSFIRYFEGHEASVTSISMHPGTDNFVSTSQDGTVRLWNVASKQWTGLLY
LNKPYLSAWDPSGNVFAVASPAAGTVLLYDHRNYQKPPFSVFDVVEQCAAVDQRNLLQGW
TKLDISNDGKHILVGTRGAGHFLLDAFDGKLKAFLRKTDEPTRRAAAGEGGDVPSASGAP
ADPTRLEGSGDCCFTPDGRYVLGGTKQNVMVWDTLGSVGENKVLNPAFVLEDKREAAVVA
FNPRFNFFATADQALVFWLPDANA
NT seq 1155 nt   +upstreamnt  +downstreamnt
atgcctgccgttcccatggacattgacacgccggcagcgggtgctgccgggccctcgctg
agtgtatcacgggccctgcgcgacactgccaccgagctgagctccatcatctccagcttc
cggccgacaaagctgtttgcgcgcgacgctaaggacaagtcgcccacctacatcttgtcg
ctcgactttgacgacccgggcgagttgtgcatgacctcggagagcgacgacaccatccaa
atctacaacgtcaagggggggcgccacgacaaggctctgattagcaaaaagtacggcgcg
aagctggcgcggtttacgcactggtcgaacagcatcgtgtacgccagtacaaaacaaaac
gactccatccgctaccttgccacccacgacaactcgtttatccgctactttgaaggccac
gaggcctcggtcacctccatctccatgcacccgggcaccgacaactttgtgtctaccagc
caggacggcaccgtccgcctctggaacgtcgctagcaaacaatggaccggcctcctctac
ctcaacaaaccgtacttgtccgcctgggacccgtcgggcaacgtctttgccgtcgcctcg
cctgctgcaggcaccgttctcctctacgaccaccgcaactaccaaaaaccgccattttcc
gttttcgacgtcgtcgagcaatgtgctgccgtcgaccagcgcaacctactgcaagggtgg
accaagctcgacatatccaacgacggcaagcacattctcgtcggcacgcgcggtgccggc
catttcttattggacgcctttgatggcaagctcaaggcgttcttgcgcaagacggacgag
ccaacgcgacgtgcagccgccggcgagggcggtgacgtgccgagtgcgtcgggcgcacca
gccgaccccacgcggcttgagggcagcggtgactgttgcttcacgccagacggccgttat
gtgcttggtggtacgaagcaaaatgtcatggtgtgggacacgctggggtccgtcggcgag
aacaaggtcctaaatccagcctttgtgctggaggacaagcgggaagcggcggtcgtggcg
ttcaacccgcgcttcaacttctttgcaacggccgaccaggcgctggtgttttggctgccg
gacgccaatgcatga

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