Sporothrix schenckii: SPSK_03046
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Entry
SPSK_03046 CDS
T05555
Name
(RefSeq) CCR4-NOT transcription complex subunit 2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ssck
Sporothrix schenckii
Pathway
ssck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSK_03046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_03046
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPSK_03046
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SPSK_03046
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
27665167
NCBI-ProteinID:
XP_016584895
UniProt:
A0A0F2LZG2
LinkDB
All DBs
Position
Unknown
AA seq
645 aa
AA seq
DB search
MVAVVHFGRMGGHEYRHGMAVAITGPIASARVVLLLPLLLCALLCLLTELWLLSQLRSPK
RSSLPVRVDRANNFSQEALLIPSGAYLTASIPNNSSHSRHGPCPVDYPTARWVSTRKTKQ
MGDRSSGTAGKRQLTGVFAGNNNASGWTFGSGVPLAGSGAGGLQNQARPQQLGGNISFAQ
SLGGSQPATPLDPSEFPSLSNNTQLANAGQASLWSTTGARNIGSQSIQRGANTPLSSQQG
QQQEDMFGASTRLPSNQGTFRFGSQAANIGQASIGQASIGQNAQSSQPGAIDDFPPLNRS
ATTGEIGQDRTTSLMSKFGYSGAQTSATSPAAPGGTAAVGTRSIGNGLLNALSANSGSRV
ASGGSEVRSPVGTRPQETSSLAAEEAAAARQKMDSDAASASAAAATSAASAAQSPIGGEA
GGPVRGADGRSSIGTMGGGDGAPSGKLREESETAIYASQDPLAGTAPIDRWGMKGLRSLL
NNPEYSAMISGYGLDLNALGVDLNTNDLLSTQTYSLFDGAAPRPAMPKFRLPECYKVSNV
GPIESKIASFNEETLMWIFYSCPNDIKQQLAAIELNNRNWRWHKRQQVWLTKDDLMMPQV
LSMNHERGFYIVWDVSTWRKERTTREITLNYGDLDNAPVAAGGAV
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggtcgcggtggtacattttggccggatggggggccacgagtatcgacacggcatggcc
gttgcgatcactggccccatagcctctgcccgtgttgttctgctgctgccgttgctcctt
tgcgctctgctgtgtctcttaacggaactgtggctgttatcccagcttcgatccccaaaa
cgttcgtctttgcctgtccgggtcgatcgcgctaacaacttttctcaggaggcgctcctc
attccctccggggcttacctaacggcttcaatacccaacaacagcagccacagcaggcac
ggtccgtgtccagtcgactacccaacggcaagatgggtaagcacgagaaaaacgaagcag
atgggagaccggtctagcgggacagctggcaaacgacagctaacaggcgtgtttgcaggt
aacaacaatgcgtcaggctggacgttcggctccggcgttccactcgcaggctcgggcgcc
ggtggcctgcagaaccaggcccggccgcagcaactgggcggcaatatcagctttgcccag
agcttaggcgggtcacaaccggccacgcctctggatccttcggagttcccctcgctgtca
aataacacgcaactagcaaacgctggacaagcatcgttatggtccacgaccggcgcacga
aacattggcagccagtcgatacaacggggcgccaacacgcccttgtcgtcgcagcaaggc
cagcagcaggaggacatgtttggtgcgtccacacgactgccgtccaaccagggcaccttc
cgcttcggcagccaggccgccaatattggccaggccagcatcggtcaggcgagtatcggc
cagaacgcacaatcatcacagccgggcgccatcgacgatttcccaccactgaaccggtcc
gccaccacaggcgagattggccaggaccgcacgacgagcctcatgtccaaattcggttac
agcggcgcccagacgtcggcaacttcacccgcggcaccaggaggtacagcagcagtcggc
acccgcagcataggcaacggcctgctcaacgccctgtcggccaactcgggatcgcgagtc
gccagcggtggtagcgaggtgcggtcaccagtcggcacacgaccgcaggagacaagtagc
ctggcagcggaggaggcggcggcagcacgacagaagatggacagcgatgctgcgtctgct
tctgctgctgctgcgacctcggcggcaagtgcggcgcagtcgccaataggaggagaggct
ggtgggccggtgcgcggtgccgacgggcgcagctcgattggtacgatgggcggcggcgat
ggagctccttctggcaagctgcgggaagagagcgaaacagcaatctacgccagccaagat
cccctagccggcacggcaccgatcgaccggtggggcatgaagggcctgcggtccttgctg
aacaatccagagtacagcgccatgatctcggggtacgggctggacctgaatgcgcttggt
gtggatctgaacacgaacgacctcttgtccacgcaaacgtactcgctgtttgacggcgcg
gcaccgcggcccgccatgcccaagttccgcctgcccgagtgctataaggtgtccaacgtt
ggcccgatcgagagcaagattgcgagtttcaacgaggagactctgatgtggatcttttac
tcgtgtccaaacgacatcaagcagcaacttgctgccattgaactgaacaaccgcaattgg
cggtggcacaagcggcagcaggtctggcttaccaaagacgacctgatgatgccgcaagtc
cttagcatgaaccacgagcgtggcttctacattgtgtgggacgtgtcgacctggcgcaag
gagcggacaacgagggaaattactctcaactatggcgacctggacaatgccccggttgcc
gcaggaggcgccgtctaa
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