Sporothrix schenckii: SPSK_03457
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Entry
SPSK_03457 CDS
T05555
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
ssck
Sporothrix schenckii
Pathway
ssck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSK_03457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_03457
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SPSK_03457
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
27665572
NCBI-ProteinID:
XP_016585457
UniProt:
A0A0F2M3P5
LinkDB
All DBs
Position
Unknown
AA seq
370 aa
AA seq
DB search
MAQQKGQLARPIFAKIAPHEFLVANLARDGQNNQSQQGTRPNGRATDESRDFDVHTGSLS
QAHGSAAVRLGRTRVICGVRGEILPVANIPQFRPSAVTADRSADHAVEADNRRQLRDYDL
LVPNLELATGSAPEFLPGGPPSVLAQVLSTRLYALLHSSGLVDAEALKIWHTPRRAADGA
DGDMDIDEEEPADAEGDGSPRTPEIKAYWTLYIDLLFLSFDGNPLDAAWAAIVAALRDTH
LPHARWDADRDRVVCSPPSVTPAPPLTLRGLPVASTAVVCVENRKRQQRQSSEVAGAHWI
LHDPDRLEEGQCHETVTAVVDCSNGTGKATVVRALSKSGGVLVGPAELHMLVASAETRWT
SLSKALGQGP
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggcacaacaaaagggccaattggcccgccccatcttcgccaagatcgcaccgcacgag
ttcctcgtcgccaacctcgcgcgcgacggccaaaacaaccagagccaacaaggcacccga
ccaaacggccgtgccaccgacgagtcccgcgattttgacgtgcataccggctcgctctcg
caggcccacggcagcgccgccgtccgtctcggccgcacgcgcgttatctgcggcgtgcgt
ggcgagatcctgcctgtcgccaacatcccccagttccgtccatccgccgtcacggccgac
cgctctgcggaccacgccgtggaggccgacaaccgccgccagctgcgcgactacgacttg
ctggtgcccaacctcgagctggcgaccggcagtgcgcccgagttcttgcccggcggcccg
ccgtccgtgctggcccaggtgctgagcacgcggttgtacgccctgctgcacagcagcggc
ctcgtcgacgccgaggcgctcaagatttggcacacgccgcggcgggcggccgatggtgct
gacggagacatggacattgatgaggaggagccggcagacgcagagggcgacggctcccct
cgcacacccgagatcaaggcgtactggacgctctacattgacctgctcttcctctccttt
gacggcaaccccttggacgccgcctgggccgccattgttgccgccctccgagacacacac
ctgccgcacgcccgctgggacgccgaccgcgaccgcgtcgtttgctccccgccctcggtg
acgcccgcgccgcccctgacgctgcgtggcctgcccgtggcgtcgacggccgtggtgtgc
gtcgaaaaccggaaacggcagcagagacagagcagcgaggtggccggtgcgcactggatt
ctgcacgacccggaccggctcgaggagggccagtgccacgagacggtgacggccgtggtc
gactgctccaacggcacgggcaaggccacagtggtgcgcgcgctgtccaagagcggcggc
gtgctcgtggggcccgcggagctgcacatgctcgtggcctcggccgagacgcggtggacg
agtctgtccaaggcattgggacagggtccatga
DBGET
integrated database retrieval system