Sporothrix schenckii: SPSK_03926
Help
Entry
SPSK_03926 CDS
T05555
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ssck
Sporothrix schenckii
Pathway
ssck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSK_03926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_03926
03041 Spliceosome [BR:
ssck03041
]
SPSK_03926
03009 Ribosome biogenesis [BR:
ssck03009
]
SPSK_03926
03016 Transfer RNA biogenesis [BR:
ssck03016
]
SPSK_03926
Enzymes [BR:
ssck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPSK_03926
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
SPSK_03926
Spliceosome [BR:
ssck03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SPSK_03926
Complex C
U4/U6.U5 tri-SnRNP related factors
SPSK_03926
Ribosome biogenesis [BR:
ssck03009
]
Eukaryotic type
Pre-60S particles
Helicases
SPSK_03926
Transfer RNA biogenesis [BR:
ssck03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
SPSK_03926
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
27666018
NCBI-ProteinID:
XP_016586551
UniProt:
A0A0F2M4Z4
LinkDB
All DBs
Position
Unknown
AA seq
1107 aa
AA seq
DB search
MDIDELFEVFDKPPSGPSQPQGGRATTPGDASRKRKAVGLSEVSAETANKAAKDVPAIPI
GETSNDADISSAAEDVPMNEDDEEDKDDDEDDEGTNGDGNGVDKQNKRRKKDGEAEPVLT
DTFQTAESREVAPASGFAPQKETESLVLQHNIQHQVALPPDLNYEYVPLSEHKRPAEPAR
EYPFELDPFQSMAISSIEREESVLVSAHTSAGKTVVAEYAIAQCFKRNQRVIYTSPIKAL
SNQKFRDFMGEFGDVGLMTGDITINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEI
HYMRDKSRGVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVYTDFRPT
PLQNYCFPAGGDGILLVVDERGVFKEKNFNTAMALVEQNKGADPADPNAKQNGRGKNKKI
NKGGGNESTSDIYKIIRMIMKKNFHPVIVFNFSKRECEMLALKISGMNFNNESEQALVTK
VFENAIDTLSETDRELSQITHLLPLLRKGIGVHHSGLLPILKEIVEILFQENLIKVLFAT
ETFSIGLNMPARTVVFTQVRKFDGVSMRPLTSSEYIQMSGRAGRRGLDDRGIVIMMVDDK
LEPETAKAIVAGKQDRLNSAFHLGYNMILNLQRIETVSPEYMLERCFFQFQNAASVPAFE
KELKALQHERDSTIIPDENTVKEYYKLRQLIEEYRKDMVLVMQHPNFCLPFLQPGRLVHI
KTPGSGEDFGWGAVLSFSQRRAPKRGEDEVPPQESYCVDVALFISDSKSAQSIAPGFPLG
EVAPGAVPWVDNANSSTASGSEDNGSGDNTSGNDKNSKTSKASKASKASNKKEDKDTNKE
KSNMTDARVEIVPCLLSTIVAMSKLRIFMPDNVTKSAGKDRTGKVIREVQRRFPDGIPVL
DPIENMKINDESFKKLIRKIELLEAKLLANPLHGSPILPELWEKYHHKAELGEKIKEKKK
AIAQAHSIAQLDELKSRKTVLRRLGFINEDDVVQLKARVACQISSTEGHELLLSELLFNR
FFNDLSPEVVASVMTCFLFDEKVEAPDLKEDLAKPLREIKSQAKIIAKVSQESKLDINEE
EYVASLKWQLMETVLAWAKGASFADIW
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggatatcgacgagctgtttgaggtctttgacaaaccgccatctgggccgtcacagccg
caggggggccgcgccacaacgcctggcgacgccagccgcaagcgcaaggccgtgggcctc
tccgaggtgtccgccgagacagccaacaaagccgccaaggatgtgccggcgatcccaatc
ggggaaacgtccaacgacgccgatatctcctcggcggccgaagatgttcccatgaacgag
gacgacgaagaggacaaggacgacgacgaggacgacgagggtaccaacggcgatggcaat
ggcgtcgacaagcagaacaagcgccgcaaaaaggacggcgaggccgagcctgtgctgacc
gacaccttccagacggctgagtcgcgtgaggtggcaccggcgtctggttttgccccccag
aaggagaccgagtcgctcgtgctgcagcacaacatccagcaccaggtggccctcccgccc
gacctcaactatgaatacgttcccctctccgagcataagcggcccgccgagcccgcgcgc
gagtatcccttcgagctcgacccgtttcagagcatggcgatttcgtcaatcgagcgcgag
gagagtgtcctggtgtctgcgcacaccagtgccggcaagacggtcgtcgccgagtacgcc
atcgcgcagtgcttcaagcgcaaccagcgtgtcatctacacaagccccatcaaggcgctc
agcaaccaaaagttccgtgatttcatgggcgagtttggcgacgtcggcctgatgacgggc
gacatcaccatcaaccccacggcgagctgcctcgtcatgaccacggagattctgcggtcc
atgctgtaccgcggctccgagattatgcgagaggtggcctgggtcgtctttgacgagatc
cactacatgcgggacaagtctcgcggtgtcgtctgggaggagaccattattttgctgccc
gacaaggtccgctacgtgttcctgtcggccaccattccgaacgcgttccagttcgccgag
tggatagctaagatccatcgccaggcgtgccacgtcgtgtacaccgatttccgtccgacg
cccctgcaaaactactgcttccccgccggcggcgacggcatcctgctcgtcgtggacgag
cgcggtgtcttcaaggagaagaacttcaacaccgccatggcgctggtggagcagaacaag
ggcgccgatccggccgaccccaacgccaagcagaacggccgcggcaagaacaagaagatc
aacaagggcggcggaaacgagtcgacatccgacatctacaagatcattcgcatgattatg
aagaagaacttccaccccgtgattgttttcaactttagcaagcgcgagtgcgagatgctg
gcgctcaagatctccggcatgaacttcaacaacgagtctgagcaggccctggtcaccaag
gtctttgagaacgccattgacaccttgtccgagaccgaccgtgagctgtcgcagattacg
cacctgctgccgctgcttcgcaagggcatcggtgtgcaccactcgggcctgctgcccatc
ctcaaagagattgtcgagatcctgttccaggagaacttgatcaaggtcctgttcgcgaca
gaaaccttctccatcggcctgaacatgcccgcccgcacggtcgtgttcacgcaggtgcgc
aagttcgacggcgtctccatgcggccgctcacgtcgtccgagtacatccagatgtctggc
cgtgccggtcgtcgtggcctcgatgaccgcggtattgtcattatgatggtggacgacaag
ctcgagcccgaaacggccaaggccattgtcgccggcaagcaggatcgtcttaactcggcc
ttccacctcggctacaacatgatcctgaacctgcaacgtatcgagacggtgtcgcccgag
tacatgctggaacgctgcttcttccagttccagaatgccgccagcgtgcccgcctttgag
aaggagctcaaggcgctgcagcacgagcgtgacagcaccatcattccggacgagaacacg
gtcaaggagtactacaaacttcggcagctcatcgaagagtaccgcaaggacatggtcctc
gtcatgcagcaccccaacttctgcctgccgtttttgcagccgggccggctggtgcacatc
aagacgcctggcagcggcgaggactttggctggggcgctgtgctgagcttctctcagcgc
cgtgcgcccaagcgtggcgaggacgaggttccaccgcaagagtcgtattgcgtggacgtg
gcgctcttcatctcggacagcaagagcgcacaaagcatcgcacccggcttcccgctgggc
gaggtggcgcccggtgccgtgccgtgggtcgacaatgccaacagcagcaccgcgagcggg
agcgaggacaacggcagcggcgacaacacgagcggcaacgacaagaactccaagacgtcc
aaagcctccaaggcgtccaaggcgtccaacaaaaaggaggacaaggacaccaacaaggag
aagagcaacatgaccgacgcccgtgtcgagatcgttccctgcttgctgtcgaccattgtc
gccatgagcaagctgcgcatctttatgccggacaatgtgaccaagtcggccggcaaggac
cggaccggcaaggtcatccgcgaggtacagcgccggttccccgacggcatcccggtcctc
gacccaatcgagaacatgaagatcaacgacgagtcgttcaagaagctgatccgcaagatc
gagctgctcgaggccaagctgctcgcgaatccgctgcacggctcgcccatcctgccggag
ctgtgggaaaagtaccatcacaaggcggagctgggcgagaagatcaaggagaagaagaag
gccattgcgcaggcacacagcatcgcgcagctcgacgagctcaagtcgcgcaagacggtg
ctgcggcgcctgggcttcatcaacgaggacgacgtagtgcagctcaaggcccgcgtggcg
tgccagatctcgtcgaccgagggccacgagctgctgctgtcggagctgctgttcaaccgc
ttcttcaacgacctgtcgcccgaggtggtggcgtcggtcatgacgtgcttcctctttgac
gagaaggtggaggcgcccgatctgaaggaggacctggccaagccgctgcgcgagatcaag
tcgcaggcaaagatcattgccaaggtcagccaggagagcaagctggacatcaacgaggag
gagtacgtggccagcctcaagtggcagctgatggagacggtcctggcgtgggccaagggc
gcctcgtttgcagacatttggtaa
DBGET
integrated database retrieval system
