Sporothrix schenckii: SPSK_03935
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Entry
SPSK_03935 CDS
T05555
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ssck
Sporothrix schenckii
Pathway
ssck03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SPSK_03935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_03935
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
SPSK_03935
U7-dependent histone pre-mRNA processing factors
SPSK_03935
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF100_C
Lactamase_B_6
Beta-Casp
Lactamase_B
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
27666027
NCBI-ProteinID:
XP_016586172
UniProt:
A0A0F2M5P0
LinkDB
All DBs
Position
Unknown
AA seq
1059 aa
AA seq
DB search
MFTFCPLQGARSESTASQSLLELDGGVKVLVDVGWDESFDAEKLRELEKQVPTISLVLLT
HATVSHIAAFAYCCKNFPLFARIPIFATRPVIDLGRTLLQDLYASTPLAAAIIPRTSLAE
VAYSYEQSTAAEHSRFLLPAPTPDEITRYFSLIRELKYSQPHQPQAPPNLPPLNGLTITA
YNAGRTLGGTLWHIQLGLESIVYGVDWGQYKENVFAGAAWIGGAHGGGSEVMEQLRKPTA
LVSSSRAPQVDRPGLRDEHLLETIRTCVVRGGTVLIPVDSTARILELAYFLEHAWRHAAA
GGGGSGDENLSRSKLYLAGRTSGSLVRHARTLLEWMNDSIVQEFEAVADGAKQANGRGSG
GAGDDGKTKEAGPFDFRHMRLLERRSQVDRVLSQPPASGGGKVILASDASLEWGFSKEIL
RRIADDPQNLVVLTDVPGRLADDRPPSVARTLWEWWRDGSNPNAEDAGDRLVHGAGRPLE
FRDTRKVALEGAELALYQQWLATQRQLQATQLSTAGSGGLGVSLLGEGGAGHLGGGMAAL
LEDGADDVSSESSSDSDDESDGDRQGKVLNVSTTIGQASRKKVVLRDEDLGVTILIKRKG
HYDFDVRGKKGRERIFPVPVRRKRNDDFGELIRPDEYLREEEREEEAAHEATGGRNSDGA
TLLPEMLGRKRKWDDVGVSTGRGQGDTKRPNLDNSNRNGHHRGDSTDGKRRGRGGNGSDD
EGGAADHDGGLYDSDVDGDDADDAAEAATTANVLGPAKLISTTETVPAWLRIGYVDYSGL
HTARNLEILLPLVEPRKLILVGGSEAETAAVAAHYRSVVSTNRGVAETDVDVLLPRVGGP
AVDASVDTHAWVVKLADALVKKLKWQNLRGLGIVTMTGQLRPGLAALPPAAANAPAASEE
STADADHNQDADDASSAGANKRQKTDASGSALAVAAPSSAPSSAAPGAAPNAQLPTLDVL
PSNVALAAARAGTQPLHVGELRLADLRRTMQASGHTAEFRGEGTLVIDGSVAVKKTTTGR
VEVESIGLPSDGGPATKVGGTFYAVKRMIYDGLAVVAGG
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgttcacgttctgccccctgcagggggcgcggtccgagtcgacagcctcgcagtcgctg
ctggagctcgatggcggcgtcaaggtgctcgtcgacgtcggctgggacgagtcgtttgac
gccgagaagctgcgcgagctggagaagcaggtgccgaccatttcgctggtgctgctgacc
catgccaccgtgtcgcacatcgccgccttcgcctactgctgcaagaacttccccctgttt
gcgcgcatccctatttttgccacgagacccgtcatcgacctcggccgcaccctgctgcaa
gacctgtacgcatcgacgccgctcgccgcggccatcatcccccgcacgtctctggccgaa
gtcgcctactcctacgagcagtccaccgccgccgagcacagccggtttttgctgccggcg
ccgacgcccgacgagatcacgcgctacttttccctcatccgcgagctcaagtactcgcag
ccacaccagccgcaggccccgcccaacctgccgccgctcaacggcctgaccattaccgcg
tacaatgccggccgcacgctgggcggcaccctgtggcacatccagctcggcctcgagtcg
attgtctacggcgtggactggggccagtacaaggagaacgtgtttgcgggcgcggcgtgg
attggcggtgcccatggcggcgggtcggaggtcatggagcagctgcgtaagccgacagcg
ctcgtgtccagcagccgcgcgccgcaggtggaccgcccggggctgcgggacgagcacctg
ctcgagaccattcgcacctgtgtcgtgcgcggcggcaccgtgctgatccctgtggactcg
acggcgcggattctggagctcgcctacttcttggagcatgcctggcgccacgcggcggcg
gggggcggcgggtccggcgacgagaacctgtcgcggtccaaactgtacctggccggacgc
acgtccggcagcctggtgcggcacgcgcggacgctccttgaatggatgaacgacagcatc
gtgcaggagtttgaagccgtggccgacggcgccaagcaggcgaatggccgcggcagcggt
ggtgctggagacgatggcaagaccaaagaggccggtccgtttgattttcgacacatgcgg
cttctcgagcgacgatcgcaagtggaccgcgttctcagccaacctcccgcatccggcggc
ggcaaggtcattctcgccagcgacgcctcgcttgaatggggcttttccaaggagatttta
cggagaatcgccgacgacccacaaaacctggttgtcctgacagacgtgccaggccgcctg
gccgacgaccggccgccctccgtggcgcgcacgctctgggagtggtggcgcgatggcagc
aaccccaacgccgaggacgctggcgaccgactcgtccacggcgcgggccgcccgctcgag
tttcgcgacacccgcaaggtggctctcgaaggtgccgagctggcgctctaccagcagtgg
ctcgccacgcagcgccagctgcaggccacgcagctctcaacagccggcagcggtggcctc
ggcgtcagtctacttggtgaaggcggcgcgggccatttggggggtggcatggcggccttg
ctcgaggacggcgccgacgacgtctcgtcggaatcgtcgtcggactcggacgacgagtcg
gacggcgaccgccagggcaaggtgctcaacgtgtcgacgacgattggccaggccagccgc
aaaaaggtggtgttgcgtgacgaggacctgggcgtgaccattctcattaaacgcaagggc
cactacgactttgatgtgcgcggcaagaagggccgcgagcgcatcttcccagtgccggtg
cgccgcaaacgcaacgacgactttggcgagctgattcggccggacgagtacctgcgcgag
gaggagcgcgaagaagaggcggcccatgaggccaccggcggcagaaacagcgacggagcg
acactgctccccgagatgctcggccggaaacgaaagtgggacgacgtcggtgtctctaca
ggacgtggccagggcgacaccaagcggccgaatctggacaacagcaaccgcaacggacac
caccggggcgattcgaccgatgggaaacgccgcggccgtggtggcaacggcagtgacgac
gagggtggcgccgccgatcacgacggcggcctctacgacagcgatgtggacggcgacgac
gccgacgacgcggccgaagcggccacgacggccaacgtgctgggcccggccaagctcatc
tccaccacggaaacggttcctgcgtggttgcgcatcggctacgtcgactactcgggcctg
cacacggcacgcaacctcgagattctgctgccgctcgtcgagccgcgcaagctgatcctg
gtgggcggcagcgaggccgagacggctgcggtcgccgcgcactaccgcagcgttgtcagc
acgaaccgcggcgtcgccgagacggacgttgacgtgctgctgccgcgcgtcggcggtccg
gccgtcgatgccagcgtggacacgcacgcatgggtcgtcaagctggccgacgcactggtc
aagaagctcaagtggcagaatctacggggcctgggcatcgtgacaatgacgggccagctg
cgacctgggctggcggcgctgccgcctgctgctgccaatgcaccggccgcaagcgaggag
agcacggccgatgcggaccacaaccaggacgccgacgacgcgagcagcgcaggcgccaac
aagcggcaaaagaccgatgccagcggaagtgctctcgcggtggccgcaccctcatctgca
ccttcgtccgccgcgccgggagccgctcccaacgcgcagctgccgacgctggacgtgctg
ccgagcaatgttgctctggcggcagcacgcgccggcacacagcccttgcatgtgggcgag
ctgcggttggcagacctgcggcgtacgatgcaggcgtccggccatacggccgagttccgt
ggcgagggcacgctcgtgattgacgggtccgtggctgtgaagaagacgacgacgggccgc
gtcgaggtcgagagcattggcctgccgtctgacggcggcccggcgaccaaagtgggcggg
acgttctacgcggtgaagcggatgatctacgacgggctggccgtagtagcgggcgggtaa
DBGET
integrated database retrieval system
