Sporothrix schenckii: SPSK_05324
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Entry
SPSK_05324 CDS
T05555
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
ssck
Sporothrix schenckii
Pathway
ssck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSK_05324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_05324
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SPSK_05324
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SPSK_05324
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP4
ECR1_N
RRP40_S1
Methyltransf_10
KH_6
Mur_ligase
Motif
Other DBs
NCBI-GeneID:
27667350
NCBI-ProteinID:
XP_016583707
UniProt:
A0A0F2LYR5
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MPITILPPLQAASRRFQSTATRRVGGWSATAGARHNDDDDEDDDENDENDDDNDSDGAAP
DNTGGYEIVTPGEVITDDPQWMRGHGTYADARGASGGIVSSLAGTVVRTNRLLSVRPLRA
RYAPEVGDLVVGRIVEVQAKRWRVDVGAAQLAALPLSAINLPGGVLRKRTETDELQIRSF
FAEGDLLVAEVQQIFGDGVAVLHTRSLRYGKLRNGVFFAVAGGGAGAGAGVVRARRQVWT
VSGDDEDDDGGGDDNNAHGEDAAMHGTNDTSGSHRHAAAYGTGAGKIDVILGVNGYVFVG
AHVEPQSASSAAAAAAAAAASGASPGPSAAAAAVGINNIEEAVSAAIYSSQNDPVSRETM
REIARLRSVVGLLVEHRLPIDEASVMKAYREALDVARHSSDRGEDDVYLGGERGDKIAAE
LGGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcaccattctgccgcctcttcaggcggcgtctcgccggtttcagtcgactgca
acaaggcgagtgggcggctggtcagccacggcaggcgcacggcacaatgacgacgacgac
gaagacgacgacgaaaacgacgaaaatgacgacgacaatgacagcgatggcgccgcaccc
gacaacacgggcggctacgagatcgtgacgcctggcgaagtcatcacagacgacccgcag
tggatgcgcggccacggcacgtacgccgacgcccgcggcgcatcgggcggcattgtgtcc
tcgctcgcgggcaccgtcgtccgcaccaaccgcctgctgtccgtgcggccgctgcgcgcg
cgctatgcgcccgaggtcggcgatctcgtcgtgggccgcatcgtcgaggtccaggccaag
cgctggcgcgtcgacgtcggcgccgcgcagctggcggccctgccgctgtcggccatcaac
ctgcccggcggcgtcctgcgcaagcgcaccgagaccgacgagctacagatccgctccttc
tttgccgaaggcgacctgctcgtcgccgaggtgcagcagattttcggcgacggcgtggcc
gtgctgcacacgcgctcgctgcgctacggcaagctgcgcaacggcgtgttctttgcggtg
gcgggcggcggcgcgggcgcgggcgcgggcgtcgtgcgggcgcggcggcaggtctggaca
gtcagcggtgacgacgaggatgacgatggcggtggtgacgacaacaatgcgcacggcgag
gacgccgccatgcacggcaccaacgacacgtcgggcagccaccgccatgctgctgcgtac
ggcacgggcgccggcaagatcgatgtcatcctgggcgtcaacggctacgtcttcgtcggc
gcccacgtcgagccacagtcggcgtcgtctgctgctgctgctgctgcggcggcggcggcg
tctggtgcatcgccaggaccttctgccgccgccgccgccgtcggcatcaacaacattgag
gaggcggtcagcgccgccatctactcgagccagaacgaccccgtcagccgcgagaccatg
cgcgagattgcccgcctgcggagcgtcgttggtctgctggtcgagcaccgcctgcccatc
gacgaggcctcggtcatgaaggcctaccgcgaggccctcgacgtcgcccgccactcgtcg
gaccgcggcgaggacgacgtgtacctgggcggcgagcgtggcgacaagattgcggcagag
ctgggagggcggtaa
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