Sporothrix schenckii: SPSK_05581
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Entry
SPSK_05581 CDS
T05555
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
ssck
Sporothrix schenckii
Pathway
ssck03018
RNA degradation
ssck03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPSK_05581
09123 Folding, sorting and degradation
03018 RNA degradation
SPSK_05581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_05581
03041 Spliceosome [BR:
ssck03041
]
SPSK_05581
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPSK_05581
mRNA degradation factors
5'-3' decay
Lsm complex
SPSK_05581
Spliceosome [BR:
ssck03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
SPSK_05581
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
27667601
NCBI-ProteinID:
XP_016583430
UniProt:
A0A0F2LV87
LinkDB
All DBs
Position
Unknown
AA seq
89 aa
AA seq
DB search
MASQLLPLELIDKCVGSRIWVVMKGEREFSGTLVGFDDYVSKYTVLFLPDMVLEDVTEFD
YSGEQTKLAKILLNGNNICMLVPGGEGPV
NT seq
270 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcaactcctccctctcgaactcatcgacaagtgcgtcggctcgcggatatgg
gtcgtcatgaagggcgagcgcgaattcagcggcacgcttgtcggttttgacgactacgtc
agtaagtatactgtgctattcttgccagacatggtcctcgaggacgtaacagaatttgac
tactcgggcgagcagacgaagctggctaagatcctgctaaacggcaacaacatatgcatg
ctggttcccggtggcgagggcccggtataa
DBGET
integrated database retrieval system
