Sporothrix schenckii: SPSK_05886
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Entry
SPSK_05886 CDS
T05555
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ssck
Sporothrix schenckii
Pathway
ssck03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPSK_05886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssck03041
]
SPSK_05886
Enzymes [BR:
ssck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPSK_05886
Spliceosome [BR:
ssck03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SPSK_05886
Complex C
U4/U6.U5 tri-SnRNP related factors
SPSK_05886
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
T2SSE
Cas3-like_C_2
SRP54
ABC_tran
FtsK_SpoIIIE
AAA_23
Motif
Other DBs
NCBI-GeneID:
27667872
NCBI-ProteinID:
XP_016591738
UniProt:
A0A0F2MHF9
LinkDB
All DBs
Position
Unknown
AA seq
1065 aa
AA seq
DB search
MSAKRYAFVDMGGDEAEDVAPTKSDRDRKSRRDRDKDRDRRRDREDKKSRRSHRSLSQSR
SPRRSTTKSYSSRSKTSRRSDRDRDDKDFDDRWGDEEGPPSDEVEDVRRGDEADDFRESA
WKRLKMNHRTFRNPDAKDEDKGKEADRDAKSSKFDAANLDIDDADLSEGTHEELIAQRDR
AEREAFAERLKARDDGRSRKDKDVDQGSSRQHLAYDAKERSEAMPELRQRARQEYLKKRE
TERLALLRRQVAEETEELRSGVPLTARETAEFAKNREILRLAEERLRIDDHRDGYVMPED
YITEKGKIDRQRKEDALYKRYVEKDAYGREKHTTEYEDWEREQATKAKAQIQSRERVDGG
EYDYILDQDQYIQWSLDSRMPAEGAGANGKALTKEQQFLQAQIDAAEKRQLSIQETRKSL
PIYQYRDEFLAALEEHQILVIVGETGSGKTTQLPQYLHEAGYTKNGLRVGCTQPRRVAAM
SVAARVADEMGVKVGSEVGYAIRFEDCTSEKTILKYMTDGMLLREFLTEPDLSSYSAIMI
DEAHERTVHTDILLALVKDLARERPDLKLLISSATMNAEKFATYFDNAPIFNVPGRRYPV
DIFYTPAPEANYLLAAVTTVFQIHTTQPTGGDILVFLTGQDEIEAAEQQISEISRKLGNR
VRELVVCPIYANLPSELQAKIFEPTPENARKVVLATNIAETSLTIDGIVYVIDPGYVKEN
VYNPATGMSNLVVVPCSRASANQRSGRAGRVGPGKCFRLYTKYAYMNEMDESTAPEILRT
NLNGVVLQLKSLGINELLDFEFMDPPPTEALIGALNQLFALQALNHKGELTKVGRQMAEF
PTDPMLAKAVIAAGKEGCVEEVLSIVSMLSEASALFFRPKDKKIHADSARARFTIQEGGD
HLTLLNIWNQWVDSDFSPIWAKENFLQQRSLTRARDVREQLAKLCERVEVELSSVGASHM
TPIKRALTAGFFPNAARMQRDGGSYRTVKSATTVYIHPSSVLMGADPPARMVIYFELVQT
TKEYMRSCLPIEPKWLSELAPHFHKKKDMEALEDKKMAKGRHHAK
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccaaacgatatgcgtttgtcgacatgggtggcgatgaggcggaggatgtggca
ccgacaaaatcggatcgagatcgcaaaagtcgacgagatcgcgacaaggatcgcgaccga
cgtcgcgaccgggaggacaaaaaatcacgacgttcacaccgcagtctctcgcaatcacga
tcgccacgacgaagcacgacgaagtcctatagcagccgatcgaaaacgagccgacgcagc
gaccgcgatcgcgacgacaaagactttgatgaccgatggggcgacgaggaagggccgccg
tccgacgaggtcgaagatgtaagaagaggtgatgaggctgacgacttccgagaatcggca
tggaagcgtctcaagatgaaccaccggacgttccggaaccccgacgccaaagacgaggat
aagggaaaggaggcggacagagacgcgaaaagctcaaagtttgacgctgcaaaccttgac
atcgatgacgcggacctgtcggagggcacacacgaggagttgatagcacaacgtgaccgc
gctgagcgcgaggcgtttgccgagcggctaaaagcgcgcgacgacggtcgatcacgaaaa
gataaggatgtcgaccaaggctcctcgcgacaacatctggcctacgatgccaaggagcgg
agtgaagccatgcctgagctgagacagagggcccgccaagagtacctcaagaaacgcgag
acagagcgcctggccctgctgcggcggcaggtggccgaagagaccgaagaacttcgcagc
ggcgttccactgacggcacgcgagacagccgagtttgcgaagaaccgcgagatcctgcgg
ctggccgaggagcggctgcgtatcgacgaccaccgcgatggctacgttatgccagaggac
tacatcacagaaaaaggcaagatcgaccgccagcggaaggaggacgcactctacaagcgc
tatgttgagaaggacgcatacggccgtgaaaaacacacaaccgaatacgaggactgggag
cgtgagcaggcgacgaaggccaaggcgcagatccagagccgcgagcgcgtcgatggcggc
gagtacgactacattctggaccaggaccagtacatccaatggtcgctcgactcgcggatg
ccagccgaaggcgccggtgccaacggcaaagccctgaccaaggagcagcagtttctgcag
gcccagattgacgcagccgagaagcgtcagctgtccatccaggagacgcgcaaatcactg
cccatttaccaataccgcgacgagttccttgctgcgctggaagagcaccagattttggtc
attgttggcgaaacgggcagtggcaagacgacccagctgccacagtatcttcacgaggcc
ggctacaccaagaatggcctgagagtcggatgcacacagccacgccgtgtcgccgccatg
agtgtggccgcacgtgttgccgatgaaatgggcgtcaaggtcggtagcgaggtcggttat
gcgattcgtttcgaagactgcacgagcgagaagacaattctcaaatacatgacggacggc
atgctgctccgcgagtttctgaccgagcccgacctctccagctactctgccatcatgatc
gatgaggcccacgagcgcacggtgcacactgatatcctactggcccttgtcaaggatctg
gcccgcgagcggcccgacctgaagctgcttatttcttcggccacgatgaacgccgagaag
tttgccacttactttgacaacgcacccatcttcaacgtgcccggccgtcggtaccctgtc
gacatcttttataccccggccccggaggccaactacctcctggcggccgtcacgaccgtc
ttccagatccacactacgcagcctacaggcggcgatattcttgtgttcttgacgggccag
gacgagattgaggctgctgaacagcaaatctccgagatctctcgaaagctgggaaaccgt
gtccgagagctcgttgtgtgtcccatctatgcaaacctgccttccgaactgcaggccaag
atcttcgagcccacgccagaaaatgcccgcaaggtggtgctggctacaaacatcgccgag
acaagtttgactattgacggcattgtttatgtcatcgacccgggatacgtgaaagaaaac
gtgtacaacccggccaccggcatgtcgaacctcgttgttgttccttgttcccgcgcctcg
gccaaccaaagaagcggccgtgccggacgtgtcgggcccggcaagtgcttccgtctgtac
accaagtacgcgtacatgaacgagatggacgagagcacagcgcccgaaatcctgcggacg
aatctcaacggcgtcgttcttcaactcaagagcttgggcattaacgagctcctagacttt
gagtttatggatccgccgcccaccgaggccttaatcggggcgctcaatcagctttttgcc
ctgcaagccctcaaccacaagggcgagctaaccaaagtcggtcgtcagatggccgagttc
ccgacggaccctatgctggccaaggctgttatcgctgctggtaaagagggctgcgttgag
gaggtattgtccattgtgtcgatgctgagcgaagcgtcggccctcttcttccggcccaaa
gacaaaaagatccacgccgacagtgcccgcgcccgcttcactatccaggagggcggtgac
catttgacgcttctcaatatctggaaccagtgggttgacagcgatttctcgcccatctgg
gccaaagagaacttcctgcagcagcgcagcttgactcgcgcccgtgatgtgcgcgaacag
ctggctaagctgtgcgagcgcgttgaggttgagctctcgtccgttggcgcctcgcacatg
acgcccatcaagcgcgccctaactgccggtttcttccctaatgcggcccgcatgcagcgc
gatggcggtagttaccgcaccgtcaagagtgccaccaccgtctacatccatcctagctcg
gtgcttatgggagcagatccccccgcgcgcatggtcatctactttgaactggtgcagacg
actaaggagtacatgcggtcctgtctcccaattgagcccaagtggctgtcggagttggcg
ccgcactttcacaagaagaaggatatggaggcacttgaggacaagaagatggccaaaggt
cggcaccatgctaagtga
DBGET
integrated database retrieval system
