Sporothrix schenckii: SPSK_05951
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Entry
SPSK_05951 CDS
T05555
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit 3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
ssck
Sporothrix schenckii
Pathway
ssck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSK_05951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_05951
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPSK_05951
mRNA degradation factors
3'-5' decay
Pan complex
SPSK_05951
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
Motif
Other DBs
NCBI-GeneID:
27667936
NCBI-ProteinID:
XP_016592188
UniProt:
A0A0F2MIR9
LinkDB
All DBs
Position
Unknown
AA seq
789 aa
AA seq
DB search
MSASSFQSTLVANTVRDRGSSKKGLNGDSPVFTPGSANSPLRKSSVLPLQAANAAPFTPL
GTSVVSASNASSSASPREQLRDLVGSKEAGQAIPRADASAFNLASVREFVPRTSDQSSGF
NAGSAREFQPRGDRSPFNVAKAVEFRPQSQTVPPSTTPTSTSSIPSQALPSPQPPQPSLI
SQQSQQASLAAQQQQQQHQVPAQGSHYNLSNGPSQQSHVSIPTGPSRAPTHDNSDHINRA
GLGGMGNLGGMGNMGAMNMGAMGGMAGLSGIGSLGFGMPPGSDVQLGQGGNVFDSYNVAS
QGASGGAITTSPYNPYAATSQQPGREGAAYYQGQAPFAAQHQPPGEHLYFPQGPHRQDLL
PRQRTIHEFFLPEKLRQDFHMKSRVGNQAAVTLSVNVESYHSLTALDTNSHKVAGSFGRI
TWLYKAVASKNGKHYCLRRVENFRVSNENALRTAREWRRVSSGNVVTVHEAFTTRAFGDS
SVVFAMDYFPLSVTLMQYHFPTYGQTRPRGNVTIQETVLWGYFVQIANALSAIHSAGLAA
RSIDLTKIIRTGKNRIRLSGCAVQDVINYDPSRRVIDLQQEDFIHFGEVMVSLATYTPPN
ELKKPLSHLDPLPEIYSHDFKAAVKWLLTPAASTTAGPKTIDSLLTGIAPQVTRFFDMSL
QENDGLYSLTSREVENGRIARLMMKLGTINERENYQRDASWAEHGPRYPLKLFRDYVFHQ
VDESGRPVVDAWHMISCLNKLDAGSNEVVRLSSRDGRTNLFVTYKELNKMVQRSFNDLIR
PTGPLRRHN
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgtcctcattccaatccacactggttgctaacacagtccgtgacagaggatcc
tcaaagaagggcctcaatggcgactctcccgtttttactcccggctctgcaaactctccg
ctccgaaagtcttcggttctacctctccaagcggccaatgcggctccgttcacaccccta
ggcacgagcgttgtgtcggctagtaacgcgtcgtcctcggcctcgccccgcgaacagctt
cgggatcttgttggcagcaaagaggctggccaggccatcccgcgagccgacgcgtcggcc
tttaacctggcatccgtccgcgaatttgttccacgcacgtcagatcagtcgtccggattc
aacgctggctcggcgagagaatttcagccaaggggggaccgctcgcccttcaacgtcgcc
aaggccgtcgagttccgcccgcagtcgcagaccgtccccccttccaccacacctacctct
acgtcctctatcccgagccaggcgctgccttcacctcagccacctcagccctctcttatt
tctcaacaatctcaacaagcttctctagcggctcaacagcagcaacagcagcaccaggtg
cctgcccaggggtcacactacaacctgtccaacggcccatctcaacagtctcacgtctcg
attcccaccggaccctcgcgagcccccacccacgacaactctgaccatatcaaccgggca
ggattgggtggtatgggcaacttaggcggcatgggcaatatgggtgccatgaacatgggc
gccatgggtggtatggccggcctaagtggtattggctccttaggtttcggaatgccacca
ggaagcgacgttcagctcggacagggtggtaacgttttcgactcctacaacgttgcttcc
cagggtgcctccgggggtgcaatcacgacttctccatacaatccctatgcggctaccagc
cagcagccgggcagagagggcgccgcgtattaccagggacaagctccctttgctgcccaa
caccagccccccggtgaacacctctacttcccccagggcccccaccgccaagaccttctt
ccgcgtcaacgcacgattcatgagttcttcttgcctgaaaagcttcgccaagacttccac
atgaagtccagggttggcaaccaagcagcggttactttgtccgtcaatgtcgagagctac
cactcgctcacagcacttgacaccaatagccataaggtcgctggctcgttcggccgcatc
acttggctctacaaggctgtggcaagcaaaaacggcaagcattattgtttgcggcgcgtg
gaaaacttccgtgtgagcaatgaaaacgctctgaggacagcacgcgagtggcgtcgcgtc
agcagtgggaatgtcgtcactgtgcacgaggcgttcacgacgcgtgcctttggagacagt
tcagtcgtgtttgctatggactacttccccctatctgtgacgctcatgcagtaccacttc
ccaacgtacggtcaaacacgcccccgcggcaatgtcacgattcaggaaacggtcctgtgg
gggtatttcgtgcagattgccaacgcactaagcgccatccacagcgccggtctggccgcc
cgcagtatcgacctcaccaagatcatccggacgggtaagaaccgcatccgcttgagtggc
tgcgccgtgcaggacgtcatcaactatgacccgtcccgccgcgtgatcgatctgcagcag
gaggacttcatccactttggcgaggtgatggtgtctctcgccacctacacgccaccaaat
gagctgaagaagccgctttcgcatctggatccgctgcccgagatttattcgcatgatttc
aaggccgccgtcaagtggctgctgacgcctgctgccagcacgactgcgggtccaaagacg
atcgactcacttctcaccggcatcgcaccgcaggtgactcgcttcttcgacatgtctctg
caggaaaacgacggcctatacagcctcacgtccagagaagtggagaatggccgcattgca
cgtttgatgatgaagctaggcacaatcaacgaacgcgaaaactaccagcgggatgcgtcc
tgggccgagcacggaccccgctaccctctcaagctcttccgcgactacgtcttccaccag
gtggacgagtccggccggcccgttgtcgatgcttggcacatgatctcgtgcctcaacaag
ctggacgccggctcgaacgaggtggtacgactctcgagccgtgacggaagaaccaatttg
ttcgtcacgtacaaggagctgaacaagatggtccagcggtcatttaatgatcttattcgt
ccaactggtccgcttcggcgccacaactag
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