KEGG   Sporothrix schenckii: SPSK_06564
Entry
SPSK_06564        CDS       T05555                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
ssck  Sporothrix schenckii
Pathway
ssck03018  RNA degradation
ssck03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ssck00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPSK_06564
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPSK_06564
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssck03019]
    SPSK_06564
   03041 Spliceosome [BR:ssck03041]
    SPSK_06564
Messenger RNA biogenesis [BR:ssck03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SPSK_06564
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     SPSK_06564
Spliceosome [BR:ssck03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    SPSK_06564
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 27668543
NCBI-ProteinID: XP_016592186
UniProt: A0A0F2ML23
LinkDB
Position
Unknown
AA seq 216 aa
MSTPFRGRYSPASRGGGGNNSGGGGRGGSGEYRGRGGAGGARGNYPRGGNRGGGDRGGGF
QRGGGRGGAGGEGGRGGGFSRGGYGGSGDREAAPKKENILDLGQYMDREIYVKFNGGREV
SGTLKGYDPLLNMVLDDAQEKMRNAEGEVKSRSLGLAVIRGTHITTLHPVDGSESISNPY
LAAAESAEGGAPEETPASKITPAYQYTPKADEEESD
NT seq 651 nt   +upstreamnt  +downstreamnt
atgtcaacaccgttccgcggccggtacagcccggcctccagaggaggtggtggtaacaac
agcggcggcggcggacgcggcggcagcggcgagtaccgcgggcgcggtggtgcaggcggg
gcacgtggaaattacccgcgtggcggcaaccgtggcggcggcgaccggggtggcgggttc
cagcgcggcggcggtcgcggtggtgctggcggtgagggcggtcgtggtggtgggttttcg
cggggtggctacggcggctctggcgaccgggaagcggcgcccaagaaggagaacatcctg
gatcttggccagtacatggaccgggagatctacgtcaagttcaacggcggccgcgaggta
tccggtacgctcaagggatatgacccgctgctcaacatggtgctcgacgacgcccaggag
aagatgcgcaacgcagaaggtgaggtcaagtcccgctcgctgggcctggccgtgatccgc
ggtacacacatcacgacgttgcatcccgtcgacggcagcgaaagcataagcaacccgtat
cttgctgctgccgagtcggccgagggcggtgcaccggaggagaccccggcgagtaaaatt
acgccggcataccagtacacgcccaaggcggatgaggaggagtcggattga

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