Sporothrix schenckii: SPSK_07565
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Entry
SPSK_07565 CDS
T05555
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ssck
Sporothrix schenckii
Pathway
ssck03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SPSK_07565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_07565
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
SPSK_07565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
27669501
NCBI-ProteinID:
XP_016591002
UniProt:
A0A0F2MJG5
LinkDB
All DBs
Position
Unknown
AA seq
416 aa
AA seq
DB search
MDIDDDDDDFYAPDEPEEQTSAATHAEAALDLKPEETSAEAETEGDAGQGDGADALEDGD
GDDGGAMDEDGDEGEDGGEEDDDDSDIDIITERKDGTKAAPPSQSKYSDIRNIPQRSTTG
EGSAKATGKSDDTAAGAAAGRRGSAGEPSAEYPAVSTSTVDINAIPVHKATGKPITQVNI
DLDLPENDKPWRKPGTDLSDYFNYGFDEFTWALYSQKQESLRTEYNQDAVASSNKRMMED
FNMMLMGGMPGLGGMPGGPGGVVGAGSGGNSMAAGGVVAGGPGANSTAAGGNNAGSGGAA
GASSGSAAAGAAQGGMQGMPGMDGGMPPEMQQMLQQMMASGMDPSQMDPATMAAMMGQMG
GGGPGGAAGQGAVAGGGYGNQGFGGNQGFGGYDQNMSGGNANRGGFNRGRGGRRNW
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggatatcgacgacgatgacgacgatttctacgcgccggatgagccagaagagcagaca
tctgccgcgacgcatgctgaagcagcattagacctgaagccagaagaaacctcggctgaa
gcagaaacagaaggggacgctgggcagggtgatggtgcagacgctttagaagatggtgat
ggcgacgatggtggtgccatggacgaagacggcgacgagggcgaggacggtggggaagag
gacgacgacgactcagacattgacatcatcaccgaacggaaagacggcacaaaagcagcc
cctccttcacaatcgaagtacagcgacattcgcaatataccacagcggtcaaccactggc
gaagggagcgccaaggcgacagggaagtctgacgacacagcggcaggagctgcagcagga
cggcgaggcagtgcaggcgaaccgtccgccgaatacccagccgtgtccacatcgactgtt
gacatcaacgccattcccgtccacaaggccaccggcaagcccatcacccaagtcaacatt
gacctggacctccccgagaacgacaaaccgtggcgcaagccgggcacggatctcagcgac
tacttcaactacggcttcgacgagttcacctgggccctctactcacaaaagcaggagagc
ctgcgcaccgagtacaaccaggacgccgtggccagttccaacaagcgcatgatggaggac
ttcaacatgatgctgatgggcggcatgccggggttgggcggtatgccgggtgggcctggt
ggtgttgttggtgctggcagcggcggcaacagcatggccgcgggcggcgtggttgctggc
gggcccggtgccaactcgactgcggccggcgggaacaatgcgggctctggcggtgctgct
ggtgccagcagtggttctgccgcggctggcgctgctcaaggcggtatgcaaggcatgcca
ggcatggacggtggcatgccacctgaaatgcagcagatgctacagcagatgatggcgtcg
ggcatggaccccagccaaatggaccctgcgacaatggctgccatgatgggacaaatgggc
ggtggtggtcctggtggtgctgccggccagggagcggttgccggcggtggttacggtaac
caaggctttggcggcaaccaaggtttcggtggctacgaccagaacatgagcggcggcaat
gctaatcgcggtgggtttaaccggggccgaggcgggcggaggaattggtag
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