Sporothrix schenckii: SPSK_08457
Help
Entry
SPSK_08457 CDS
T05555
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ssck
Sporothrix schenckii
Pathway
ssck03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SPSK_08457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssck03021
]
SPSK_08457
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_08457
Transcription machinery [BR:
ssck03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
SPSK_08457
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
SPSK_08457
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
Pfc11_Clp1_ID
zf_PCFS4
VHS
zf_UBZ
UBZ_FAAP20
Motif
Other DBs
NCBI-GeneID:
27670331
NCBI-ProteinID:
XP_016588223
UniProt:
A0A0F2M7D5
LinkDB
All DBs
Position
Unknown
AA seq
909 aa
AA seq
DB search
MSYEDQSEGVASDFRDALSELTMNSRVEITTLTVIARENTEYAHGISEVLQEHIKKVAPQ
RKLPALYLLDSIVKNVGTPYTIYFGRGLYSTFMDAYASVDNGTRRKMDEMLKTWKEPVPG
SVDPRPVFSPETTRPIENALIKARTSALQAQHEHIRSEQQLLGRGRPNSATPYRETPTPP
GPSGRPGYPPQGPYGQQQPLLQEQQPPQQSYPFHPPPNQTTQTTPQPPAYTTAGGPFQPP
PQQPQQQQPPFQNPYAPPATPSRISLESLNEDVERLIQATKTEFTEKSYDVGVAGRLKAL
LDLQTILKSQGLEHDKLVLVRNQIDALAVNLPAHLKVGISSAPTPPAANYPLFQAPPVAS
AAGAPASAPGGNPPLSAAVLAALAAARSMAAAGSTPPAQTPAPPPPQPAPAGGMSIDGLL
GKGALAAILAARQQPPSQPQQQHHHQQPPPPPPQAQAPYVFPSTPQLAQLLQGVLSQQQM
APAPAPSAPTNTANPLALVDMLRKAGILQQQTPAQNAPFQPPTQPPLPPAGLNVPGLANI
IASIRNNAVAAPRDPLREIQNEISFQSSSLKQFRPHLLPLMYENLGPPCTQCGRRFRTDE
AGRAAKTAHMDWHFRVHQRIAEAEKRGQHRSWYVDQADWIHSRETIDSDGVDHHGANGSS
AAGGSGGRLAGSNAAGGDAGAAGAKLQWIPVPTGSANTNQTCPICQEKFEMKWLDEAQEW
VWIDAVRIGSRVYHASCHAEATRSDNNRDHPAAAAHSALMAGGNGPVITKPIPTGPAADR
NRHQHGHNGPNAVLGKRKADDGANFHGNGNGNHRGGKNGARGGSAASGGGRKKKRGGMGG
AGGGSNPRRPPDLDRVDPDIGGGGIGGSASGEGGGGGGRFGRNSGKHRGGAHKDNNSDEP
EVDLNALPY
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgaagaccagtcggagggcgttgcctcggacttccgggatgctctcagtgaa
ctgacgatgaactcgcgggtcgagatcaccacgctgactgtcatcgcccgggagaacacc
gagtacgcacatggcatttcggaagtgcttcaggaacacattaagaaggttgctcctcaa
cgaaagttgccagccctctacctcctcgactccatcgtcaagaacgttggcaccccctac
acaatctactttggccgcggtctttattcgactttcatggacgcctacgcctctgtcgat
aatggtacgcgacgcaagatggacgagatgctcaagacgtggaaggaaccagtgcccggg
tccgtcgacccccggcctgtgttcagcccagaaaccacccgcccgatcgagaatgctctt
attaaggcgagaacatcggcgctgcaagcccagcacgaacacatacgtagcgagcagcag
ttgctcggccgtggacgcccaaacagtgccactccttatcgcgagacaccaacaccaccg
ggacccagtggccgtccaggctaccctccacaaggcccgtacggccagcagcagcccctc
ctgcaagaacagcaaccgccgcaacagtcgtaccccttccacccaccaccgaatcaaaca
acacaaacaacaccacagccgcctgcatatacaacagcgggcggtccgttccaaccacca
ccacagcagccacagcaacagcaaccgccgtttcagaatccttatgcccctcctgccact
ccttcaaggataagcttagagtcgctgaatgaagatgtcgaacggttgatccaggcaacc
aagacagagtttacagagaagtcgtatgatgtcggtgtggcagggaggttgaaggcgctg
ctggatctacagaccatcctaaagagccaaggcctcgagcacgacaagctcgtcctagta
agaaatcaaattgatgccctcgccgtaaatttacctgcccatctaaaggtcggcatcagc
tcagcgccgacgccgccggcagccaactatcctcttttccaggccccgccggtggcatca
gcagcaggagcacccgcatctgcgccgggtggcaacccgcccttgtcagccgccgtattg
gctgctttagccgctgctcggtctatggcagctgcgggctctacacctcctgcacaaacc
ccggcgccgcctccgccacaaccggcacctgccggtggtatgtcaatcgacggccttctt
gggaagggtgcgcttgctgcgatccttgccgcgcggcaacaaccgccgtctcaaccacag
cagcagcaccaccaccaacagccgccgccaccgccgccacaggcacaggcaccatacgta
tttccaagtacaccgcagctagcacagctgcttcagggtgtgctatcccagcagcaaatg
gcgcctgcccctgccccatctgccccaaccaacacggccaacccgttggctttggtggac
atgcttagaaaagctggaatcctccaacagcagacacctgctcagaatgcccctttccag
cccccgacgcagccacctctacccccagctggcctgaatgttccgggtttggccaatatc
attgcgtccatccggaacaacgccgtcgctgctccccgtgacccgttacgcgagattcag
aacgaaatttcgttccagtcctcgtctcttaaacaattccgtcctcaccttctgcctttg
atgtatgaaaaccttggccctccttgcactcagtgcggacgtagattccgtaccgacgag
gctggccgtgcagccaagacagctcacatggactggcacttccgtgtccaccagcgcatt
gccgaagccgagaaacgtgggcagcaccgcagttggtacgtcgaccaggcggactggatc
cactctcgtgagacgatcgactcggacggcgtcgaccatcatggggccaacggcagcagt
gcagccggcggcagtggtggccggttagcaggctctaatgctgctggtggcgatgccggt
gctgcaggggccaagctgcaatggatccctgtccctacgggcagcgccaacaccaaccag
acctgccccatctgccaggagaagttcgagatgaagtggctcgacgaggcgcaggagtgg
gtctggatcgatgccgtccggatcggttcgcgggtctaccatgccagctgccacgccgag
gcgacgcggagcgacaacaaccgtgaccatccagcggctgctgcccattcagccctgatg
gccggcggtaacgggccggtcattacgaaacccatcccgacaggacctgcagccgaccga
aaccgccaccagcacggacataatggtcctaacgcagttctcggaaagcgcaaggccgat
gacggcgccaacttccacggtaacggcaatggcaaccaccgtggaggcaaaaatggagcc
cgtggtggtagtgctgcaagcggtggtggccgcaagaagaagcgcggcggtatgggtggt
gcgggtggaggtagcaacccccgtcggccaccggatctggaccgtgtcgaccccgatatt
ggcggcggtggcattggcggttccgcatcgggcgagggcggcggcggcggcgggcggttc
ggccgcaatagtgggaagcaccgtggcggtgcccacaaggacaacaacagcgatgagccc
gaggtggaccttaacgctttgccgtactaa
DBGET
integrated database retrieval system
