Sporothrix schenckii: SPSK_09125
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Entry
SPSK_09125 CDS
T05555
Name
(RefSeq) ATP-dependent RNA helicase UAP56/SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ssck
Sporothrix schenckii
Pathway
ssck03013
Nucleocytoplasmic transport
ssck03015
mRNA surveillance pathway
ssck03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPSK_09125
09122 Translation
03013 Nucleocytoplasmic transport
SPSK_09125
03015 mRNA surveillance pathway
SPSK_09125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_09125
03041 Spliceosome [BR:
ssck03041
]
SPSK_09125
Enzymes [BR:
ssck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPSK_09125
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SPSK_09125
Spliceosome [BR:
ssck03041
]
Complex C
Other components
EJC/TREX
SPSK_09125
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SPSK_09125
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
27670981
NCBI-ProteinID:
XP_016588176
UniProt:
A0A0F2M9M5
LinkDB
All DBs
Position
Unknown
AA seq
488 aa
AA seq
DB search
MYERAPDTRFYPRAREFSGKTFVLGRPHKPIRTLAPMRYINLDSNVGSLESVAEDDQHCP
FRLCFAGGRTSFLSLSFLSPLPLGFLLPISSTISHSICVQFDSLLSKTSNSDIRTPHFTV
QQTCIPQALIGGDIICQAKSGSGKTAIFVLSTLQQIEPVDGECSVLVLCHTRELAFQIRN
EYNRFSKYMPEVRTSVFYGGTKVTEDIAILRSPETHPHIVVGTPGRLNALVRDKHLRLGS
VRMFVLDECDKMLEGVEMRRDVQDIFRATPRQKQVMMFSATLSQEILPICRKFLQNPTEH
LVEDHVELALDGVRQFHIFLPEDKKIRKLVDILDQLDINQVMVFVKSRGRAEQLSKVLEK
FNFPTCYIHGDMKQEERDAVYKKFKKGDTLRVCVATDIFGRGVDFERINLAINYDMPKEV
ATYQHRVGRAGRFGTNGAGISFLSTEEDKESFKAVEEYFKKTFPEYPEEGLKLKDGGNTA
GAEEVVAN
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagcgagcgccagatacaagattctatccccgagcacgagagttctcggggaag
acttttgtacttggacggccgcataaacccatccgaacgctggcccctatgcgttacata
aatttggattctaatgttggctccctcgaaagtgttgctgaagacgaccagcactgccct
ttccgtctttgcttcgctggtggacggacctcttttctctcactctcatttttgtccccc
ctccccctcggttttcttttaccgatttcgtctacgatttcacacagcatctgcgtccaa
tttgattccctactttcaaaaacaagcaattctgacatccgaacgccccactttacagtc
cagcaaacctgcattccccaagcccttattggtggtgacatcatctgccaggccaagtct
ggctccggtaagacagccattttcgtgctgtctaccctgcagcagatcgagcccgtcgac
ggcgagtgctcggttctcgttctgtgccacacgcgcgagctggctttccagatccgcaac
gagtacaaccgcttctccaagtacatgcccgaggtccgcaccagcgtcttctacggcggt
accaaggtcaccgaggacattgcgattctccgcagcccggagacgcacccccacattgtt
gtcggcacccccggtcgtttgaacgcccttgttcgcgataagcacctgcgtctcggcagc
gtccggatgttcgtgctcgacgagtgcgacaagatgctggaaggagttgagatgcgccgt
gatgtccaggacattttccgcgccactccccgccagaagcaggtcatgatgttctcggcc
accctgtcccaggagatcctgcccatctgccgcaagttcctgcagaatcccacggagcac
cttgttgaggatcatgtcgagctggcccttgacggcgtgcggcagttccatattttccta
ccggaggacaagaagatccgcaagcttgtggacattcttgaccagctggacatcaaccag
gtcatggtctttgtcaagagccgtggccgcgccgagcagctgtccaaggtgctggagaag
ttcaacttccccacctgctacatccacggtgatatgaagcaggaggagcgtgacgccgtc
tacaagaagttcaagaaaggcgacaccctgcgtgtctgcgttgccactgacattttcggc
cgtggtgtcgactttgagcgcatcaacctggccatcaactacgacatgcccaaggaggtt
gccacgtaccagcaccgtgtcggtcgtgctggtcgtttcggcaccaacggcgccggtatt
tcgttcctcagcactgaggaggacaaggagagcttcaaggctgttgaggagtacttcaag
aagaccttccctgagtatcccgaggagggccttaagctcaaggacggcggcaacactgct
ggcgctgaggaggttgttgcgaactaa
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