Sporothrix schenckii: SPSK_09277
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Entry
SPSK_09277 CDS
T05555
Name
(RefSeq) ATP-dependent RNA helicase
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ssck
Sporothrix schenckii
Pathway
ssck03013
Nucleocytoplasmic transport
ssck03015
mRNA surveillance pathway
ssck03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPSK_09277
09122 Translation
03013 Nucleocytoplasmic transport
SPSK_09277
03015 mRNA surveillance pathway
SPSK_09277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_09277
03041 Spliceosome [BR:
ssck03041
]
SPSK_09277
03009 Ribosome biogenesis [BR:
ssck03009
]
SPSK_09277
03012 Translation factors [BR:
ssck03012
]
SPSK_09277
Enzymes [BR:
ssck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPSK_09277
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SPSK_09277
mRNA cycle factors
Stress granule specific factors
SPSK_09277
Spliceosome [BR:
ssck03041
]
Complex C
Other components
EJC/TREX
SPSK_09277
Ribosome biogenesis [BR:
ssck03009
]
Eukaryotic type
90S particles
Helicases
SPSK_09277
Translation factors [BR:
ssck03012
]
Eukaryotic type
Initiation factors
eIF-4
SPSK_09277
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
COG4_N
Flavi_DEAD
TniB
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
27671130
NCBI-ProteinID:
XP_016587701
UniProt:
A0A0F2M895
LinkDB
All DBs
Position
Unknown
AA seq
401 aa
AA seq
DB search
MAESSGKAGKLDDRVELTTSKEVKVFPTFESMSLKENLLRGIYAYGYETPSAVQSRAIVQ
ICKGRDTIAQAQSGTGKTATFSISALQVINAASRETQALVLSPTRELATQIQSVVKALGD
YMNVQCHACIGGTNVGEDIRKLDQGQHIVSGTPGRVADMIRRRNLRTRNIKMLVLDEADE
LLNQGFREQIYEVYRYLPPATQVVVVSATLPQDVLEMTYKFMTDPVRILVKRDELTLEGL
KQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMRESNFTVSSMHGDM
PQKERDSIMQDFRQFNTRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRF
GRKGVAINFVTNEDVRILRDIELYYSTQIDEMPMNVADILS
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtccagcggcaaggcgggcaagctcgacgaccgcgtggagctgaccacctcc
aaggaagtcaaggtgtttccgacgtttgagtcgatgagtctgaaggagaacctcctccgc
ggcatctatgcctacggctacgagacgccctcggccgtccagtcccgcgccatcgtgcag
atctgcaaaggccgcgacaccatcgcccaggcgcagtccggcacgggcaagacggcgacc
ttctccatcagtgccctccaggtcatcaatgcggcgtcccgcgagacgcaggcgcttgtg
ctgagcccgacgcgcgaactcgcgacgcagatccagagcgtcgtcaaggcgctgggcgac
tacatgaacgtgcagtgccacgcgtgcatcggcggcaccaacgtgggcgaggacatccgc
aagctcgaccagggccagcacattgtgtcgggcacgcccggccgcgtggccgacatgatc
cggcggcgcaacctgcgcacgcgcaacatcaagatgctggtgctcgacgaggcggacgag
ctgctgaaccagggcttccgcgagcagatctacgaggtgtaccggtacctgccgccggcg
acgcaggtcgtggtggtgtcggcgacgctgccgcaggacgtgctcgagatgacgtacaag
ttcatgacggacccggtgcgcatcctcgtgaagcgcgacgagctgacgctcgagggcctc
aagcagtactttattgccgtggagaaggaggagtggaagtttgacacgctctgcgacctc
tacgacaccctgaccatcacgcaggccgtcatcttctgcaacacgcgccgcaaggtcgac
tggctcaccgacaagatgcgcgagtccaacttcaccgtcagcagcatgcacggcgacatg
ccgcaaaaggagcgcgacagcatcatgcaggactttcgccagttcaacacgcgtgtgctc
atctccaccgacgtctgggcgcgcggcatcgacgtgcagcaggtcagcctcgtcatcaac
tacgacctgcccagcaaccgcgagaactacatccaccgcatcggccggtccggtcgcttc
ggccgcaagggcgtggccatcaactttgtcaccaacgaggacgtgcgcatcctgcgggac
attgagttgtactactcaacccagattgacgagatgccaatgaatgtggccgacattctg
tcgtaa
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integrated database retrieval system
