Sporothrix schenckii: SPSK_10960
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Entry
SPSK_10960 CDS
T05555
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ssck
Sporothrix schenckii
Pathway
ssck03020
RNA polymerase
ssck03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPSK_10960
09124 Replication and repair
03420 Nucleotide excision repair
SPSK_10960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssck03021
]
SPSK_10960
03400 DNA repair and recombination proteins [BR:
ssck03400
]
SPSK_10960
Enzymes [BR:
ssck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPSK_10960
Transcription machinery [BR:
ssck03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
SPSK_10960
DNA repair and recombination proteins [BR:
ssck03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
SPSK_10960
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_5
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
SBF2
Motif
Other DBs
NCBI-GeneID:
27672458
NCBI-ProteinID:
XP_016587424
UniProt:
A0A0F2M4X0
LinkDB
All DBs
Position
Unknown
AA seq
1266 aa
AA seq
DB search
MADYDDGYEYDDIVEGEGEGDESITPEDCWKVISSYFEKKSLVSQQIDSFNEFTTTTVQS
LIDEHSLLTLDQSNPPITADRPVKLRRYEIKFGSVMVSKPQFAEGDGRVSTLTPYECRDR
NLTYSCPIYARITKKVSLAVDEEIPYDELDEEQIQEMNQTGEQPTRIVWEEEAAEVADVE
KDKTDEDMKDMVFMGRLPIMVRSKICHLATEDEEGLFLLNECPYDQGGYFIINGSEKVLI
AQERSAANIVQVFKKAQPSKFSYTAEIRSALEKGSRLISSLSIMLLTKGDTQRGSFGQTV
HSTLPYIKSELPIAVVFRALGVVSDEDILNHICYDRHDSQMLEMLRPCIEEAFCIQDREV
ALDYIGKRGQNSHAVSRKDRVRAARDILQKEMLPHISQSEGCETRKAFFLGYMVHKLLQC
ALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIIRKMYQELMNHLKRCVDTGKHFDLRVGI
RHQTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKL
AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVEFMIARNMEVLEE
YEPVRYPNATKVFVNGSWVGVHQDPKHLVSLVQGLRRKGVIQSEVSLVRDIRDREFKIFS
DAGRVMRPLFAIEQEEKAESGREKGQLLLTKEHIQRLDEDDALPRDDPRFFGWDGICEAG
AIEYLDAEEEETAMICMTPEDLDNYRLQKAGYEIPEDVTDEDINKRVKTKVNPTTHMYTH
CEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYPRRMDTMANVLYYPQ
KPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRAYT
DSEKRVGINFVETFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPINL
DHQELGQRTQSHVKRDASTPLRSTENGIVDQVVVTTNQDNLRYVKVRVRTTKIPQIGDKF
ASRHGQKGTIGLAYRHEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVATLKGM
EGDATPFTDVTVDSVSGLLREHGYQSRGFEILYHGHTGRKLRAQVFFGPTYYQRLRHMVD
DKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAYRV
HICEICGLMTPIANLTKQSFECRPCKNKTRIAQVQIPYAAKLLFQELASMNIAARMFTDR
SGVSIR
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggccgactacgacgacggttacgagtacgacgacattgtcgaaggcgagggcgagggc
gacgagagcatcacgcccgaggactgctggaaggtcatctcgtcctactttgagaagaag
agcttggtctcgcagcagatcgattccttcaacgagtttacgaccaccacggtccagtcg
ctcatcgacgagcactccctcttgacgctcgaccagagcaacccgcccatcaccgccgac
cgccccgtcaagctgcgtcgctatgaaatcaagtttggcagcgtcatggtgtccaagccg
cagttcgccgaaggcgacggccgcgtgtccacgctgacgccctacgagtgccgcgaccgc
aacctgacctactcgtgccccatctacgcgcgcatcaccaaaaaagtgtcgctggccgtc
gacgaggagatcccctacgacgagctcgacgaagagcagattcaggagatgaaccagacc
ggcgagcagcccacgcgcatcgtctgggaggaggaggccgccgaggtggccgacgtggaa
aaggacaagacggacgaggacatgaaggacatggtgttcatgggtcgcctgcccattatg
gtgcgctccaagatctgccacctggccaccgaggacgaggaaggcctgtttctgctcaac
gagtgcccctacgaccagggcggctactttatcatcaacggctccgaaaaggtcctgatc
gcccaggagcgctcggccgccaacatcgtgcaggtcttcaagaaggcccagcccagcaag
ttctcctacaccgccgagattcgcagcgcgctcgaaaagggctcgcggctgatctcgtcg
ttgagcatcatgctgctgaccaagggcgacacgcagcgcggcagcttcgggcagaccgtc
cacagcaccctgccgtacatcaagtccgagctgcccatcgccgtcgtcttccgcgccctc
ggcgtcgtgtccgacgaggacattctgaaccacatctgctacgaccgccacgacagccag
atgctggagatgctgcggccgtgcatcgaggaggccttttgcatccaggaccgcgaggtc
gcgctcgactacattggcaagcgtggccagaactcgcacgccgtcagccgcaaggaccgc
gtgcgcgccgcgcgcgacattctgcaaaaggagatgctgccgcacatttcgcagagcgag
ggctgcgagacgcgcaaagccttcttcttgggctacatggtccacaagctgctgcagtgc
gccctcggccgccgcgacaccgacgaccgcgaccactttggcaagaagcgcctggacctg
gcgggcccgctgctggccaagctgttccggggcatcatccgcaagatgtaccaggagctg
atgaaccacctgaagcgctgcgtcgacacgggcaagcactttgacctgcgcgtcggcatc
cgccaccagacgctgaccaacggcctcaagtactcgctcgccacgggcaactggggcgac
cagaagaaggccatgagctcgacggccggcgtgtcgcaggtgctgaaccgctacacgttt
gcctcgaccctgtcgcacctgcgccgcaccaacacgcccatcggccgcgacggcaagctg
gccaagccgcgccagctgcacaacacgcactggggtctcgtgtgcccggccgagacgccc
gagggccaggcctgcggcctcgtcaagaacctgtcgctcatgtgctacgtcagcgtgggc
acgcccgccgaccccattgtggagtttatgattgcgcgcaacatggaggtgctcgaggag
tacgagcccgtgcgctaccccaacgcgaccaaggtctttgtcaacggcagctgggtcggc
gtgcaccaggaccccaagcacctggtcagtctggtgcagggcctgcgccgcaagggcgtc
atccagtcggaggtgtcgctggtgcgcgacattcgcgaccgcgagttcaagatcttctcg
gacgccggccgggtcatgcggccgctgtttgcgattgagcaggaggaaaaagccgagtcc
ggccgggaaaagggccagctgctgctgaccaaggagcacatccagcggctggacgaggac
gacgcgctgccgcgcgacgacccccggttctttggctgggacggcatctgcgaggcgggt
gcgattgagtacctggacgccgaggaggaggagacggcgatgatctgcatgacgccggag
gacctggacaactaccggctgcagaaggcgggctacgagatccccgaggacgtcaccgac
gaggacatcaacaagcgggtcaagaccaaggtgaacccgacgacgcacatgtacacgcac
tgcgagatccacccgagcatgctgctgggcatctgcgccagcatcatccccttccccgac
cacaaccagtcgccgcgcaacacgtaccagtcggccatgggcaagcaggccatgggcttc
ttcctgaccaactacccgcggcgcatggacaccatggccaacgtgctgtactacccgcag
aagccgctggcgacgacgcggtcgatggagtacctcaagttccgcgagctgccggcgggg
cagaacgcgattgtggcgattctgtgctactcgggctacaaccaggaagattcggtgatt
atgaaccagagcagcatcgaccgcggcctgttccgcagcctgttcttccgcgcgtacacg
gactcggagaagcgcgtgggcatcaactttgtcgagacgtttgagaagccgttccgcagc
gacacgctgcgcctcaagcacggcacgtacgacaagctggacgacgacggcattgtggcg
cccggcgtgcgcgtgtccggcgaggacattatcattggcaagacgtcgcccatcaacctg
gaccaccaggagctgggccagcgcacgcagtcgcacgtgaagcgcgacgcgtcgacgccg
ctgcgtagtacggagaacggcattgtcgaccaggtcgtggtgacgacgaaccaggacaac
ctgcggtacgtcaaggtgcgggtgcgcacgaccaagatcccgcagattggcgacaagttt
gcgtcgcgccacggccaaaagggcaccattggcctcgcgtaccgccacgaggacatgccg
ttcacggccgagggcatcacgccggacattatcatcaacccacacgccatcccgtcgcgc
atgacgattgcgcacttgattgagtgtctgctgagcaaggtggcgacgctcaagggcatg
gagggcgacgcgacgccgtttaccgacgtcacggtggactccgtgtccgggctgctgcgc
gagcacggctaccagtcgcgcggctttgagatcctgtaccacggccacacgggccgcaag
ctgcgcgcccaggtcttcttcggcccgacctactaccagcgcctgcgccacatggtcgac
gacaagatccacgcgcgcgcgcgcggccccgtgcagatcatgacgcggcagccggtagag
ggtcgtgcgcgcgacggcggtctgcggttcggtgaaatggagcgcgactgcatgattgcg
cacggtgcggcggcttttttgaaggagcgtctgtttgaggtgtcggacgcctaccgagtc
cacatttgcgagatttgtggactcatgacgccgattgcaaacctcacgaaacaatcgttc
gagtgccggccgtgcaagaacaagacgcgcattgcgcaggtgcagatcccctacgcggcc
aagctgctgttccaggagctggcatcgatgaacattgccgcgcgcatgtttaccgaccgg
tcgggcgtgtcgattcgttga
DBGET
integrated database retrieval system
