Scomber scombrus (Atlantic mackerel): 133976269
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Entry
133976269 CDS
T10651
Name
(RefSeq) collagen alpha-1(XXVIII) chain-like
KO
K23619
collagen type XXVIII alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssco01002
]
133976269
Peptidases and inhibitors [BR:
ssco01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
133976269
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_CoxE
DUF3388
Motif
Other DBs
NCBI-GeneID:
133976269
NCBI-ProteinID:
XP_062270416
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Position
24:complement(13155056..13188250)
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AA seq
1167 aa
AA seq
DB search
MVPSLHWFLLLWGLQGLCAQGYDEDSREQVVTTRKRSKVYSSNFIPQNSKALVDEDCNVE
IAFLIDSSESAKENHAQEKHFVTEVVDRMQGLRLQTGRGISSRAALLQYSSTVLTEQTFK
EWRGADNFKAKVTPIVYIGHGTYTTYAITNLTRIYLDESDPSSIKVAVLLFDGISHPRNP
DIFAAVADAKNQGVRFFTIGITPEANEPANVAQLRLIANSPASRYLHNLQDKGIVDKVIK
EITTLAEDGCPLVRSPCMCDKGERGPVGPAGKKGRPGDDGVPGQKGTKGESGLSGLPGRE
GSEGKSGYKGEKGERGECGTPGIKGDRGPEGPIGPKGNRGLQGLPGPLGDSGPEGVMGRK
GERGLSGPPGVQGETGIGLPGPKGDVGFQGQLGPPGPPGLGEPGPPGPQGQQGVQGERGQ
IGEGLPGPKGERGLEGPRGPRGQQGAGIKGDKGDFGPPGLQGHIGLPGMGIQGEKGVEGP
RGPPGGRGQPGEGLPGPKGDQGLPGEVGASGERGAGDPGAKGEPGSQGLSGLPGLPGEDG
APGQKGEVGPVGVRGPEGIHGIGTQGEKGDQGSRGIRGLTGPPGIAGPSGPKGEPGSQGR
GGSPGPPGRFVVGPKGDPGPNGPPGPIGETGYGLPGPKGDRGDSGSAGPLGPKGDGYPGP
TGPPGLPGLPGEPGLEGLGIPGPKGDVGFRGLPGLPGPPGEGLQGPPGNTGRPGPLGPAG
PPGQGVQGPKGEQGAQGVTGPRGQPGEGFPGAKGDRGAGGERGLKGIKGDLGDPGSSGQP
GRPGVKGEAGLTREDIIRMIKEICGCGIKCKERPMELVFVIDSSESVGPENYEIIKDFVN
ALVDRVTVGRNATRIGLVLYSLEVKLVFNLARYVNKEDIKQAIRNIPYMGEGTYTGTAIR
KATQEAFYSSRVGVSKVAIVITDGQTDKREPVKLDLAVREAHAANIEMFALGIVNTSDPT
QAEFRRELNLIASDPDTEHMFLIDDFNTLPALESKLVSQFCEDENGALIYNRVTNGYGYN
GYGGNGNRNGYNGPNTIGPGTNNHGHGGRGDNNQGHGGRNPVTGTERGDTFNRNTQDVPS
SGGGSTSSSTNSTQYIPAPRPALPKETVPLDPRCNLVLDQGTCRDYNIRWYYDKQANACA
QFWYGGCNGNQNRFDTENECKRTCVTA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggtcccctcactgcactggttcctgctattgtggggacttcagggtctttgtgcacag
ggctatgacgaagactctcgtgaacaggtggtgactaccaggaagaggagcaaagtatat
tcatccaatttcataccacaaaatagcaaagcattagtcgatgaagactgcaacgtagag
atagctttcctgatcgacagctcagagagcgccaaagagaaccatgctcaggagaagcac
ttcgtcacagaagtggtggaccgaatgcagggcctccgcctgcagaccggccggggcatc
agctcccgtgcagcactcctccagtacagcagtacagtcctcacagagcagaccttcaaa
gagtggaggggcgccgacaacttcaaggccaaagtgactcccattgtgtacatcggccac
ggcacctacacaacctacgccatcaccaacctaacccgcatctacctggatgagtcggat
cccagcagcatcaaggtggccgtcctgctctttgatggcatctcgcaccccagaaatcca
gatatatttgcagctgtggctgatgccaagaaccagggagtccgtttcttcaccataggt
atcacacctgaagccaatgaacctgccaatgtagctcagttgaggcttattgctaattcc
ccagcttcacgctatcttcacaacctgcaggacaaaggcattgtggataaagtcatcaag
gagattacaacactggcagaagatgggtgtcccctggtccggagcccatgtatgtgtgac
aagggtgagaggggacccgttggccctgctggtaagaaggggcgtcccggagatgatgga
gtccccggccaaaagggaacaaagggtgagagtgggctcagtggacttcctggtcgggag
ggatcggagggaaaatcaggatacaaaggagagaagggagagaggggggagtgtggcaca
cctggaattaaaggagacagaggtcctgaaggtcctattgggccgaaaggaaatcgtgga
cttcagggtttgcctggtccacttggtgattctggacctgaaggtgtgatgggaagaaaa
ggggaacggggactttctgggccacctggagtccaaggggaaactggaatcggtcttccg
ggacccaagggtgatgttggtttccaggggcaactggggccgccgggtcctccaggactt
ggcgagcccggaccaccggggcctcaagggcaacagggagtccaaggagagagaggacag
ataggagaaggtctccccggaccaaagggagaacgaggcttggaggggccacgggggccc
agaggacagcaaggcgccggaatcaaaggagacaagggggattttggccctccaggtctt
caggggcatattggcctcccaggaatgggcatacagggtgagaagggcgtggaaggacca
aggggtccaccagggggaagaggacaaccaggagaaggtttacctggacccaagggagac
caggggttaccaggcgaggttggcgcctcaggagaaagaggtgctggagaccctggagct
aagggtgagccaggatcacaaggattgtctggtttgccgggcctgccaggagaggacgga
gcccctggacagaagggtgaggtaggacctgtaggtgtaagggggccagagggaatacat
ggtattggcacccagggtgaaaagggtgaccaaggctcaaggggaatcagaggcttgact
ggtccacctggcattgctggaccctctggaccaaagggagaaccaggttcgcagggcagg
gggggctcacctggtccaccaggccgattcgttgtcggacccaagggtgatcctggccca
aatggtcctcctggtccgattggggagactggctacgggcttccaggtccaaagggtgac
cgaggagattcaggctctgcaggtccactcggtcccaaaggagacggctaccctgggccc
acgggccctccaggtttgcccggacttccaggagaacccggcctagaaggattgggcatc
cctggaccaaagggggatgttggtttccgagggttacctggtttacctggacctccaggc
gaaggtctccaaggacctccgggtaacaccgggcgaccaggcccactggggccagcaggg
cctccaggacaaggagttcaagggccaaagggtgaacagggggcccagggtgtgacagga
ccaagggggcaaccaggagaaggcttccctggagctaaaggcgaccgtggcgcagggggg
gagaggggactgaagggaatcaaaggagatttgggagaccctggatcctcaggccaacct
ggtcgacccggtgttaaaggtgaagcaggcctcactagagaggacatcattcggatgatc
aaagagatttgtggatgtgggatcaaatgtaaggagaggcctatggagctggtgtttgtc
attgacagctcagagagtgtgggcccagaaaactacgagattatcaaggactttgtcaat
gcattagttgaccgggtcactgtgggccgcaacgccaccaggattggtctggtgctttac
agcctggaggtgaagctggtgttcaacctggcccgttatgtgaacaaagaagacatcaag
caggccattaggaacatcccatacatgggagagggcacctacacgggtacagccatccgc
aaagctacccaggaagccttctacagttcccgtgtgggagtcagcaaagtggccatcgtg
atcactgacgggcagacggataaacgagagccggtaaaactggatttagccgtacgagaa
gctcacgctgccaatattgagatgtttgctctgggcatcgtgaatacttcagacccaaca
caggctgagttccgcagagagctgaatctcatcgcctccgacccagacactgagcacatg
ttcctcattgatgacttcaacaccctgccagctttggaatccaagttggtcagccagttc
tgtgaggacgagaatggagccctgatttataacagagtaactaacggctacggatacaat
ggctacggtggcaacggcaacaggaatggctacaatgggcccaataccatcggacctggc
accaacaatcatggccatggaggccggggggacaacaaccaaggacatggaggaaggaac
ccagtgaccgggacagagcgcggggacacatttaatcgcaacacccaagatgtcccatcc
agtggcggaggctctacctcatcttctacaaattctacacaatatatacctgcaccacgg
ccggctcttcccaaagaaaccgtgcctttggaccctcgttgcaacttggttctggatcag
ggaacatgtcgggactataacattcgctggtactacgacaaacaggccaacgcctgtgct
cagttctggtatggaggctgtaacggcaaccagaaccgcttcgacacggaaaatgagtgc
aagaggacgtgtgtgacggcctga
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