Scomber scombrus (Atlantic mackerel): 133976552
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Entry
133976552 CDS
T10651
Symbol
obsl1a
Name
(RefSeq) LOW QUALITY PROTEIN: obscurin-like protein 1a
KO
K19574
obscurin-like protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssco03036
]
133976552 (obsl1a)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Centrosome formation proteins
3M complex
133976552 (obsl1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
V-set
Ig_MYOM1
VEGFR1-3_N_Ig-like
Izumo-Ig
Ig_6
Ig_5
Receptor_2B4
C2-set_2
C2-set_3
Tissue_fac
Motif
Other DBs
NCBI-GeneID:
133976552
NCBI-ProteinID:
XP_062270756
LinkDB
All DBs
Position
24:complement(6469891..6483471)
Genome browser
AA seq
2001 aa
AA seq
DB search
MDIFGGAPRVLGYPRPVLAKCGTDATLRCQIGGDPRPDVIWERKNLQILNEGRYKISEDG
KAYLLTITGVTEQDAGQYICKARNSVGETYAAASLKVEGEAQQQEGGQRQLEVNGVKQPM
KEKVEQQVXRKTRRDXFNNDDKPRFLIKPLSLRVDRGEDAAFSCKIWGTPVPEVVWEKDG
KKLNDIFESSHFSVNKQDGGWFQLKIYRTRMPDKGVYTCKAVNCNGEALAGAVLLVEQVP
ERNENKTASNSQWSPKNRGGRLGLSKAKEEPHVSSAKVKKFAVAEGKHAKFRCLVTGKPK
PEIFWKKDGMPLEPGRRHLIFEDREGYYTLKVLYCKVQDTGLYVCAASNALGNTLSAVHL
TVKGPPVRFRCPLKDVEVRERDVAVLECEVPDESVPTAWYLEDQRLMPSSKYGMEQKGTR
RRLTIHDVGTDDDGVYLCEMPDGGKSIAELSVKGTIIRKLPRKLEVLEGENAAFCVEVED
DEMEVHWFKDGFKLHETHQTILKSFGRTHILVFVNVAYQDSGVVSFVAGRSKTSSRLKVK
ATRHCPPICPVGVKMDVDRTNSALLTWVPSPNSPTSTRSIFAVERQEVGSQEWQKCFTSE
TSTSAEVTGDSVPCEGDYRFRVCCINKYGRSGHVEFQKVVHLVPGPKIRSRLQGCEVTEG
EDASFSIELSASMVGTWFLNSAQLKHGGRYLIKQSQTQHSLVILETSSTEDTAEITFIAN
GVRDSAVLNVKPAVVKFNPLPELDTMKKVEPGDAIVLYCEVSHPFAKVSWFKDGEELQVT
EGLNIQSDGNMRRIVIQSADQSHSGDYTCETSGDVIKFNVDVEGPAVSFSPAPEEELHKS
SMELDPVVLLCHVSRDDAEVVWYKDGCEIQPSDNITLQAEGTMRRLIIRSAESSDAGSYT
CQAGKNSMEFTVNVREPPVMIVDPKDDVVMESYISEEIHLQCELSRSSGKVRWSKDGQKV
EENNNVQLISEGPYRRLVIPCAKVEDSGEYVCETDGDSVFFQLNVTEPLVRIIHPSESEI
ELTNLASTRLELNCEISQSDAHVKWFRDGLEVEEGPNLILEVDGAQRRLVIPMTTVDDTG
EYACDTADDSIAFLVIIAEPPVALTRPQNMVDQVENVAGKPIVLEIEVSRTNAEVKWWLN
GKEVEESSNVTITEDGLIRRLTIQSPSPADSGKYTCDAVDDSIDFQVKVSELPVNILRKS
EVKTNLKSLISDDIVLECELSRANAISKWYKDGCRIEDDERFCQEEEGAFRSLVILSAEL
GDSGEYFLDVGDDNIMFQVAVEEPPVTIVGNSNDADYQELVAGDDLILACEVSRASAPVE
WYCNDRLLTIDSRTCIESYGTLRKIMISDIQHSDSGKYTCDAVDDKMICVVRIQVPRVVE
FITELHNTTVLEGEDATFKCVVSPENVQLVWLMDNEVITLGDRFQATQNGLCHTLVIKKC
QMLDCSRITAEAEGTMSKASLKVQEAQVMFTKKAEAVMAEEFGEATLETEISLETGEVQW
MRQGVVIQGSPRHTLAQNGCKRSLTIYNLTLSDRGTYRCETLHDRTQVKLNVEPRKITIR
KGLNDQETFERETASFEVELSHTDVEGIWQKDGIRVKPNNQWRVSTNGRVHGLTLSNLTL
EDTGTIVFSGEGVRTTARLTVKETPVTILRALADVRVEEEFPATLECEFSRQNVEVKWLK
NGTELKAGKNCRIYSMGRKRFCQFQLCSRADSGTYTCDTGEITTSCSLEVYEHELKIVQD
LEDLYIKEDQNAVFMCEVSLEDAPGEWYKDGHKIRPTSTIKTRTEGTKHFLLICNVKAED
AGEIRFAARDVESTANLEVEELPVSIVKPLRDRTALEKHRVILECTVSSPRCSATWYKGR
EELEPSDRVDILVDDCCHKLVIQQVAVEDEGTYSIEVGEHTSKAKLMVEAQALMMVSELE
DVEVMESESASFQCEVSVAINKPPVWTLNGETLLPGPSVHQENHGTIHKLTLKNTSVDMS
GVVKFTMGKAKSSATLSVVEN
NT seq
6006 nt
NT seq
+upstream
nt +downstream
nt
atggatatttttggaggtgctcctcgtgttttgggctacccacggcctgtattggcaaag
tgtggcacagatgccacactaaggtgccagattggtggtgaccctcgtcctgatgtgatc
tgggagcgtaaaaatttacagattttgaatgagggacgctacaagatctctgaggatgga
aaagcatacctgctgactattactggagtgaccgagcaggatgctggccagtacatctgc
aaagctagaaatagcgtaggtgaaacctatgcagcagcctcccttaaagtagagggggag
gcccaacaacaggaaggggggcaaaggcaattagaggtcaatggtgtgaagcaaccaatg
aaagagaaagtggaacagcaagtctaacgaaaaacacgaagagattgatttaacaacgat
gataaaccaagattcctcatcaagcccctctcactgcgtgtggacagaggggaagatgcc
gccttctcctgcaaaatctggggcacgcctgtgcctgaggtggtatgggaaaaagacggc
aagaagctgaatgacatctttgagagctcccacttcagcgtgaacaaacaagatggtggc
tggttccagctcaagatctacaggacgcgtatgccagacaaaggtgtgtacacctgtaag
gccgtcaactgcaacggtgaagccttggctggcgctgtccttcttgttgagcaggtacct
gagcgaaatgagaataaaacggcctcaaacagccaatggtcaccaaaaaacagaggcggg
agactcggtttgtcaaaagctaaagaggagccacatgtcagctcagctaaagtcaagaag
tttgcagtggcagaggggaaacacgcaaagtttcgctgcttggtgacggggaaaccaaaa
ccagagatcttttggaagaaagatggcatgcccctagagcccggaaggcggcatttgata
tttgaggacagagaaggttactacacgctgaaagttctgtactgtaaggtgcaggatact
ggactgtatgtgtgtgcagcatcaaatgctctggggaacacccttagtgctgttcatctc
accgtcaaaggcccacctgtgcggttcaggtgtccattaaaagacgtggaggtgagggag
agggatgttgctgtgcttgagtgtgaggttcctgatgagtcggttcctactgcctggtac
ctggaggaccagaggctgatgcccagcagtaagtacggaatggagcagaaaggcacgagg
cgaagactcaccatccatgatgttggtactgacgacgatggagtgtatctctgtgagatg
ccagatggaggaaagagtattgcagagttatcagttaaaggtaccatcattcgtaaactt
ccccggaagctggaggtccttgagggtgagaatgctgcgttctgcgtggaggtggaggac
gacgaaatggaagtccactggttcaaagatggttttaagttgcatgagactcatcagacg
atcctgaagtctttcggcagaactcatattctggtcttcgtcaatgtggcctaccaagac
tcgggggtagtgagctttgtcgcagggagatccaagacctcatcacgtctcaaagtcaaa
gccacaagacattgccctcctatctgtcctgttggagtcaaaatggacgtagatcgcaca
aacagtgctctcctcacctgggttccttcccccaacagcccgaccagcacccgctccatc
ttcgcggtggagagacaggaagtgggctcgcaggagtggcagaagtgtttcacctcggag
acctccacctcagccgaggtcactggtgacagcgtgccatgtgagggggactaccgcttc
cgtgtctgttgcatcaacaaatacgggcgaagcggccatgtggagtttcagaaagttgtc
catctggttcccgggccaaaaattcgcagtcgcctccaaggctgcgaggtcactgaggga
gaggatgctagtttttccatcgaactatctgcctcaatggttggaacctggtttctgaac
agtgctcaactgaaacatggtggacgatacttgataaaacagtcccaaacacagcactca
ttggttatccttgaaactagtagtacagaggacacagcagagatcacattcatagccaat
ggagtccgggattcagcagttctcaatgttaaacctgctgtggtgaagttcaaccctctc
ccagaattagacaccatgaagaaggtggagcctggtgatgctattgtgctctactgtgaa
gtctcacacccctttgctaaagtatcctggttcaaagatggtgaagaactccaggtgacc
gaaggcctcaacatccaatcagatgggaacatgaggaggattgtgatccaatcagctgac
cagtctcactctggagattatacatgtgaaacttcaggggacgtcatcaaatttaacgtg
gacgttgaaggtcctgctgtgagtttcagcccagcacctgaggaagagctccataagagc
agcatggagctggaccctgtcgttctgctctgtcacgtctccagagacgatgctgaagtc
gtctggtataaggacggctgtgagattcagcccagtgacaacatcactctgcaggcagag
ggaaccatgaggcggctgatcattcgctctgcagaatcctccgatgctggcagctacacc
tgccaagcaggaaaaaacagcatggagttcacagtcaatgtcagagagcccccagtgatg
atcgtggaccctaaggacgatgttgtgatggagagctacatctcagaggagatccacttg
cagtgtgagttgtctcgctccagtgggaaggtgcggtggtccaaggatggtcaaaaggtg
gaggagaacaacaatgtccagctgatatctgagggtccttacagaaggctggtcatcccc
tgtgccaaggtagaagacagtggagagtatgtctgcgaaaccgatggagactctgtcttc
ttccagcttaatgtaacagagccattggtacgaataattcaccccagtgaatcagagatt
gagctgacaaatttggcctctacaaggctggagctcaattgtgagatatcgcagtcggac
gcccatgtgaagtggttcagagatggcctggaggtggaagagggccctaacctgatccta
gaggtggatggggcccaacgccggctggttatacccatgaccactgtagatgacacaggg
gagtatgcatgtgacactgcagatgactccattgccttcttggtgattattgctgagcca
ccagtggcacttactcgcccccaaaacatggttgaccaagtggagaatgttgctgggaaa
ccaatcgtgcttgagattgaggtgtctaggaccaatgcagaagtgaagtggtggctaaat
ggcaaagaagtagaggagagcagtaatgtgactatcacagaggacgggttaattcgacgt
ctcaccatccagtctccttctccagctgattctgggaaatatacctgtgatgctgttgac
gatagcattgatttccaggtcaaagtttcagagcttccagtgaatatcttaagaaagtca
gaggtgaaaacaaatcttaagtctctgatttctgatgacattgtgctggagtgtgagctc
tccagagcaaacgccatcagcaaatggtataaggatggctgtcgtattgaggatgacgaa
aggttctgccaggaagaggaaggcgcttttcgctcactggtcatcctcagtgctgagctt
ggagactctggagagtacttccttgatgttggagatgacaatatcatgttccaggttgct
gtagaagagcctccagtgaccattgtgggcaactcaaatgacgcagactatcaggagttg
gtagcaggtgatgacctaatcctggcctgtgaggtgtcccgtgccagcgcccctgtcgag
tggtattgcaatgacaggctgctcaccattgactcccgtacctgcattgagagctatggc
actctgaggaaaattatgatctcagatatccagcactcagattccgggaaatacacgtgt
gatgctgtggatgacaagatgatctgcgttgtcaggattcaagtgcctcgggtggtggag
ttcatcactgagctccacaacaccaccgtgcttgaaggagaagatgccaccttcaagtgt
gtggtttctcctgaaaatgtccagctggtctggctcatggacaatgaagtaatcaccctc
ggcgaccgtttccaggcaacccaaaatggcctatgccacaccctggtgatcaaaaagtgc
cagatgttagactgttccagaatcacagccgaggctgaaggaacgatgagcaaggccagc
ctcaaggttcaggaggctcaggtcatgtttactaagaaagcggaggccgtcatggcagag
gaatttggcgaggccaccttggagactgagatcagccttgagacaggcgaggtccaatgg
atgaggcaaggggtagtcatccagggcagtccccgacacacgctggctcagaatgggtgt
aaacgcagtctgaccatctacaatctgactctgtcagaccgtggaacctaccgctgtgag
actctgcatgacaggacgcaggtcaagctcaatgtagaaccccgtaaaatcaccatccgt
aaaggcctaaatgaccaagaaacctttgaacgagaaactgcatcctttgaggtggagcta
tcccacaccgatgttgagggcatttggcaaaaggatggcatcagggtgaaacctaacaac
cagtggcgggtgagcaccaatgggcgagtccatggcctcaccctgtccaacctcaccctg
gaggacacagggaccatcgtcttctcaggtgaaggggtgcgaacaactgccaggctcact
gtcaaagagacaccagttactatcctgagagcactggctgatgtccgtgtcgaggaagaa
tttcccgccactttggaatgtgaattctccagacaaaatgttgaagtcaaatggctcaag
aatgggacggagctgaaggcagggaagaactgtcggatatactccatgggccggaagcgg
ttctgtcagttccaactgtgctcccgtgctgactctggcacctacacatgtgacacaggg
gaaatcaccacttcctgttcactggaggtttatgagcatgagttgaagattgtgcaggat
ctggaagacctttacatcaaggaggaccagaatgctgtcttcatgtgtgaggtttcgctt
gaggatgcgcccggggaatggtacaaggacggccacaagatccggcccaccagcaccatc
aagacccgcactgaagggaccaaacacttcctgctgatatgtaacgtcaaagctgaagat
gctggagaaatacgcttcgcagccagagatgttgaatctacagctaatctcgaagtagaa
gaactcccagtttccatcgttaaacccctgcgagaccgaacagccctggagaaacaccgg
gtgatcctcgaatgtacagtctcctcaccccgctgcagtgccacctggtacaaaggcagg
gaggagctggagccctccgatcgagtggacatcctggtcgacgattgctgccataaactg
gtgatacagcaggtggccgtggaggacgagggcacctacagcattgaggttggggagcac
acatccaaagccaaactcatggtggaagcccaggccctcatgatggtcagcgagctggaa
gacgtggaggtgatggagtctgaatctgcgtctttccagtgtgaggtgtctgttgccata
aacaaacctccagtttggactttgaacggagaaacccttctgccgggcccctctgtccac
caggaaaaccacgggacgatccacaaactcaccctgaaaaacaccagtgtggacatgagc
ggggtggtgaagtttaccatgggcaaagccaagagcagcgccacactcagtgttgtggaa
aactaa
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