Scomber scombrus (Atlantic mackerel): 133976577
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Entry
133976577 CDS
T10651
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
133976577 (scn1lab)
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
133976577 (scn1lab)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
Spem1
ATP-synt_B
IQ
Motif
Other DBs
NCBI-GeneID:
133976577
NCBI-ProteinID:
XP_062270785
LinkDB
All DBs
Position
24:complement(13454874..13483684)
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AA seq
2012 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPESLAAIERRIAEEEARRPRAERRSDSDDDNGPKPNSDLEAGK
SLPFIYGDTPPHLVSTPLEDLDTFYSNQKTFIVLNRGKTIFRFNATPALYILSPFNPLRR
VAIRVLVHSMFSMLIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYITEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRVPLNVSASLNDSALFNSSLQ
QNDTEIFNWTEYISDENNYYSLPGRRDALLCGNGSGAGLCPEGFVCLKTGRNPDYGYTSF
DTFGWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMVFFVLVIFLGSFYLVNLILAVVAMA
YEEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQAGYLSFLLVAAAAATESGEYNGRGGP
TSESSSGTSKLSSKSAKERRNRRKKRKQREEEEERGVCDKFHKSESEDSIKRSSFRFSID
ANRLSYEKRCSSPNQSLLSIRGSLFSPRRNSRASLFSFRGRARDMGSENDFADDEHSTFE
ESDSRRGSLFLPRRLERRSSAVSQTSLGAPRIVLPANGKMHCAVDCNGVVSLVAGTSVTT
SHVGLLLPEGTTTDTELKKRRTGFRKPSMDYLEEPGGRQRAMSVASILTNTMEELEESRQ
KCPPCWYRFANTALIWDCCPTWLKIKNIVNTVVMDPFVDLAITICIVLNTLFMAMEHYPM
TDDFSNALTVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGFIVSLSLMELGLANV
EGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLF
GKSYKECVCKISDECKLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVF
MMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQRGIAFVKSTVLQ
SLCFGGSGKGLAKESKPLDELHSNGKGNFVSNHTSVEISKDPSGVYMTEGNGRPGGGLVV
GVGVGGDSTEKYPMEECDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDMEGSK
EKLDIVPKHLSSSEGSTVDIRPPGDGVDSIELEPEESLDPEACFTEGCVSRFQCCQINEE
EGHFKTWWNLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKTIKTVLEYSDK
VFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSELTAIKSLRT
LRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYYCV
NTTTDETLPIDRANNKTECLNLVNDSARWRNVKINFDNVGAGYLALLQVATFKGWMDIMY
AAVDSRDVEDQPQYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIF
MTEEQKKYYNAMKKLGSKKPQKPIPRPTNAFQGCVFDCITKQAFDIVIMILICLNMVTMM
VERDDQTEDMDKILYWINLVFIVLFTGECVLKMISLRHYYFTIGWNIFDFVVVILSIVGM
FLSEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFL
VMFIYAIFGMSNFAFVKHEAGIDDMFNFETFGNSMICLFQITTSGGWDGLLSPILNKREP
DCDSQIEHPGNYYKGNCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEP
LSEDDFEMFYEVWERFDPDATQFMEYSKLSDFADALDPPLRMPKPNMIQLISMDLPMVSG
ERIHCLDILFAFTKRVLGEGGEMDVLRGQMEERFMASNPSKVSYEPITTTLRRKQEDMSA
TIIQRAFRHYMIRLAMKKASALYKEKLKEGIRDPDKDVMVISKFTENSTSDKTDMTPSTA
SPPSYNSVTKSDKDKYEKENRDKENKGKDRKK
NT seq
6039 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggacctgacagcttccgccccttcgtcccggagtcg
ctggccgccatcgagaggcgcatcgccgaggaggaggcccggagaccgcgggcggagcgc
cgcagcgacagcgacgacgacaacgggcccaagcccaacagcgatctcgaggcggggaaa
tctctgccgttcatctatggggacacccctccccacctggtgtccactcctctggaggac
cttgacaccttctacagcaatcagaagaccttcatagtattgaatcgcgggaagacaatc
ttccgtttcaatgccactcctgccttgtacatcctaagccctttcaaccctctaaggagg
gtagctattagagttttagtacactcgatgttcagcatgttgatcatgttcaccatcctg
accaactgtgctttcatgaccctcagtaatcccccggaatgggccaagaatgtagagtac
acattcacagggatttacaccttcgagtccctgataaagatcctggccaggggcttctgc
gtggggaagttcactttcctcagagacccatggaactggctggatttcagtgttatcctc
atggcgtatataacagagtttgtaaacctaggcaatgtttcagctctgcgaacgttcaga
gtattgcgagctttgaaaactatctcggtaatcccaggcttgaagaccatcgtcggcgcc
ctgatccagtcggtgaagaagctgtcggacgtgatgatcctcaccgtgttctgcctcagc
gtgttcgccctcatcggcctgcagctcttcatgggcaacctgaggcagaagtgcgtgcgc
gtgccgctcaacgtcagcgcgagcctcaacgactcggcgcttttcaacagcagcctgcag
cagaacgacacggagatcttcaactggacggagtacatcagcgacgagaataattactat
tccctccctggccgtagggatgctctgctctgtgggaatggcagcggcgccggtctttgt
ccggagggcttcgtatgtctcaaaacgggccgtaacccagactacggttacaccagcttc
gacaccttcggctgggccttcctctctctgttccgactaatgacccaggactattgggaa
aacctctaccagcagacactgcgcgcggcagggaaaccctacatggtcttcttcgtgctg
gtcatcttcctgggctccttctacctggtcaacctgatcttggccgtggtggcaatggct
tacgaggagcagaaccaggcgaccatcgaggaggctcagcagaaggaggaggagttccag
gccatgctggagcagctgaagagacagcaggaggaggcacaggcaggatatttatctttc
ctcttagttgccgcggcagcagccacggagagcggagagtacaacgggagagggggcccc
acctcggagtcgtcctcagggacgtctaagctcagctcaaaaagtgccaaggagcggcgc
aacaggcggaagaagaggaagcagagggaggaggaggaagagaggggggtctgtgacaag
tttcacaagtctgagtctgaggacagcatcaagagatccagcttccgcttctccattgat
gccaaccggctctcttatgagaagagatgctcctcacccaaccagtctctcctcagcata
cgcggatccctcttctcaccgaggaggaacagccgcgccagcctgttcagcttccgcggc
cgggcacgcgatatgggctcggaaaacgactttgcggacgacgagcacagcaccttcgag
gagagcgacagccgccggggctccctgttcttaccgcgccggctcgagcgccgcagcagc
gccgtcagccagaccagtctaggggccccacggatcgttctgcccgccaacggcaagatg
cactgtgccgtagactgcaacggcgtggtgtcgctggtcgctggaacttctgtaacaacc
tcccatgtaggtctactgctgcctgagggtacgactacagatacagagctgaagaaacgg
cgcacaggttttcgcaagccgtccatggattacttagaggaaccaggaggcaggcagaga
gccatgagcgtggccagcatcctcaccaacaccatggaggagcttgaagagtctagacag
aagtgccccccctgctggtatagatttgcgaacaccgctctgatttgggattgttgcccc
acatggttgaagatcaagaatattgtcaacacggtggtcatggacccatttgtggatctg
gcaatcacaatttgcatcgtcctcaacacccttttcatggccatggagcattaccccatg
acagatgatttttctaatgctcttacagtcggaaaccttgtgttcacagggatcttcaca
gcagagatgtgcttcaagatcatcgccctggatccctactactacttccaggagggctgg
aacatctttgacggcttcattgtcagtctgagtctgatggagctcggtttggccaatgta
gaaggcctgtctgtgctcaggtcctttagattgctgagagtcttcaaactggccaagtca
tggcccactctgaacatgctgatcaagatcatcggtaactcagtgggggctttgggcaac
ttgactctggtgctcgccatcatcgtcttcatcttcgccgtggtgggcatgcagctgttc
ggcaagagctacaaggagtgtgtgtgtaagatttcggacgaatgcaagctaccccgctgg
cacatgcacgacttcttccactccttcctgattgtgttccgagtgctgtgcggagagtgg
atcgagaccatgtgggactgcatggaggtggcaggacagagcatgtgcctgatcgtcttc
atgatggtcatggtcattggaaacctggtggttctaaacctattcctggctctcctcctg
agctcattcagcgctgacaacctggcagcaaccgatgacgacagtgagatgaacaacctg
caaattgctgtgggcaggatccagcggggtatcgcctttgtcaaatccactgtcctccag
agcctctgctttggggggagcggtaagggtctggccaaggagagcaaacccctggatgaa
ctgcacagcaatggcaaaggcaactttgtctccaaccacacttctgtggagatcagcaaa
gaccccagcggggtttatatgacagagggaaatggacggccaggaggagggctggtggtt
ggggtgggggttggtggggacagtacagagaagtaccccatggaggaatgtgactacatg
tcatttattcataaccccagcctgactgtcaccgtgcccatcgccgtgggtgagtcggac
tttgagaaccttaacacagaagattttagcagcgactcgtcagacatggagggcagcaaa
gagaagctggacatagtgcccaagcatctcagctcttcagaggggagcacagtcgatatt
cgccccccaggagatggggtcgattcaatagagctagagccggaggagtcactggaccca
gaggcctgcttcaccgagggctgtgtgagtagattccagtgctgccaaatcaacgaggag
gaaggccattttaagacctggtggaacctcaggaaaacctgctttatcatagtggagcac
aactggtttgaatccttcatcatattcatgattctgctcagcagtggagcgctggccttc
gaggacatttacatcgaacagaggaaaaccatcaaaacagtgctggagtactcagacaaa
gtcttcacttacatcttcatcctggaaatgctgttgaagtgggtggcatacggcttcgtc
aagtacttcaccaacgcctggtgctggctcgacttcctcatcgtagatgtgtccttggtc
agccttgtagccaacgctctgggctactctgagctcaccgccatcaaatctctgaggaca
ctgcgagccctgcggcccctgagggctctgtctcggtttgagggcatgagggttgtggtg
aacgctctgctgggggccatcccctccataatgaacgtgctgctggtctgcctcatcttc
tggctcatcttcagcatcatgggcgtcaacctgttcgcagggaagtactattactgcgtc
aacaccaccacagacgagacgctgcccatcgaccgggccaacaacaagacagagtgcctg
aacttggtcaacgacagcgcccgctggaggaatgtcaaaatcaacttcgacaatgtcgga
gccggatacctggctctgctccaagtggcaacatttaagggatggatggacatcatgtac
gcagccgtggactctcgagatgtggaagaccagcctcaatatgaagtcaacttgtacatg
tacctctactttgtcatcttcatcatctttggctcctttttcaccctcaacctcttcatc
ggtgtcatcatcgacaacttcaaccagcagaagaaaaagtttggaggtcaggacatcttc
atgacagaggaacagaagaaatactacaatgccatgaagaagctgggttccaagaaacca
caaaaacccataccacggccaacaaatgcatttcaaggctgcgtgtttgactgcatcaca
aagcaggccttcgacatagtgatcatgatcctcatctgccttaacatggtgaccatgatg
gtggagagggacgaccaaacagaagatatggacaaaatcctctactggatcaatctggtc
ttcattgtgctcttcacgggagagtgtgtgcttaagatgatatccctgcgtcactattac
ttcaccattggctggaatatatttgactttgtggtggtaatcctgtcgattgtaggcatg
tttttatctgaagttatcgagaagtactttgtatctcctacgctgttccgagtgattcgc
ctagccaggataggccgcatcctccgccttatcaaaggtgccaagggcatccgaacactt
ctctttgccttgatgatgtcacttcctgccctattcaacattggcctcctcctcttcctg
gtcatgttcatctacgccatctttggcatgtccaacttcgccttcgtcaagcatgaggca
ggaattgatgacatgttcaatttcgagacctttgggaacagtatgatctgtttatttcag
atcaccacctcaggtgggtgggacggcctgctgtcacccatactgaacaagagggagcct
gactgtgatagtcaaatagaacacccgggcaactactacaaaggcaactgtggcaatcca
tcagtgggcatcttcttcttcgtcagctacatcatcatttgcttccttattgtggtcaac
atgtacattgccgtcatcctggagaatttcagcgtggcgacagaggagagcgccgagccg
ctgagcgaggacgactttgagatgttctacgaagtgtgggaacgctttgatcctgacgcc
actcaattcatggagtacagcaagctctctgactttgcagatgctctagatccaccgtta
cgcatgcccaagcctaacatgatccagctcatttccatggacctgccgatggtcagtggc
gagcgcatccactgcctcgacatcctgtttgccttcaccaagcgagtgttgggcgaaggc
ggtgagatggacgtgttacgtgggcaaatggaggagcgcttcatggcctctaacccctct
aaggtgtcttatgaacccatcaccaccacgctccgccgcaagcaggaggacatgtctgcc
acaatcatccagagagccttccgccactacatgatccgcttggccatgaagaaggcctcc
gctctctacaaggagaagctcaaggaggggatccgtgacccagacaaggacgtgatggtc
atcagcaagttcactgagaactcaacctcggacaaaacagacatgaccccctccacagcc
tctccgccctcctacaacagcgtgacaaaatcggacaaggacaaatacgagaaagaaaat
agggacaaagaaaacaaagggaaagaccgaaagaaatag
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integrated database retrieval system
