Scomber scombrus (Atlantic mackerel): 133976620
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Entry
133976620 CDS
T10651
Symbol
appa
Name
(RefSeq) amyloid beta (A4) precursor protein a isoform X1
KO
K04520
amyloid beta A4 protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
133976620 (appa)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssco01002
]
133976620 (appa)
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ssco00535
]
133976620 (appa)
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133976620 (appa)
Peptidases and inhibitors [BR:
ssco01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
133976620 (appa)
Proteoglycans [BR:
ssco00535
]
Cell surface proteoglycans
Others
133976620 (appa)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Others
133976620 (appa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
APP_E2
APP_N
APP_Cu_bd
APP_amyloid
Beta-APP
Kunitz_BPTI
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
133976620
NCBI-ProteinID:
XP_062270855
LinkDB
All DBs
Position
24:complement(9168870..9203897)
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AA seq
790 aa
AA seq
DB search
MGDRVALLLLAVVASALAAEVPTDVSMGLLAEPQVAMFCGKLNMHINVQSGKWEPDPSGT
KSCIGTKEGILQYCQEVYPELQITNVVEANQPVSIQNWCKKGRKQCRSHLHIVVPYRCLV
GEFVSDALLVPDKCKFLHQERMDQCESHLHWHTVAKESCGDRTMNLHDYGMLLPCGIDRF
RGVEFVCCPAEAERDADSTEQDADDSDVWWGGAETDYSDNSMVREPEPAEQQEETRPSVV
EEDVEEEEEVAEEDEEEEEEEEEEEDLLDNDQDGDGEEDEEVVEDEVEEEEEEGDEDIVD
TLDDNDDADEPTTNVAMTTTTTTTTESVEEVVREVCWANAETGPCRALLPRWYFDRQEGR
CAQFIYGGCGGNRNNFESEEYCLSVCSSVLPTATPSSPDAVDHYLETPADENEHAHFQKA
KESLEAKHRERMSQVMREWEEAEREAKNLPRPDKKAVIQRFQEKVEALEQEAASERQQLV
ETHMARVEALLNDRRRLALESYLTALQQDPPRPRHVFSLLKKYVRAEQKDRQHTLKHFEH
VRMVDPKKAAQIRPQVLTHLRVIEERMNQSLGLLYKVPGVADDIQDQVELLQREQAEMAQ
QLANLQTDVRVSYGNDALMPDRELGDGRTDLLPQEDTLGLGGVGFIHPESFNQPNTENQV
EPVDSRPNLDRGIPTRPVNGMKMEAIPELRMETEDRQSTEYEVHHQKLVFFAEDVGSNKG
AIIGLMVGGVVIATVIVITLVMLRKKQYTSIHHGVIEVDAAVTPEERHLSKMQQNGYENP
TYKFFEQMQN
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgggggaccgagtagctttactgctgctagctgtagtggcgtcggctctggccgccgag
gtgcctacagatgtttcaatgggtctgttggcagagccccaggtggccatgttttgcggt
aaactcaacatgcacatcaacgtgcagagtgggaagtgggaaccggacccctcgggcacc
aagagctgcatcggcaccaaggagggcatcctgcagtactgccaggaggtgtacccagag
ctccagattaccaatgtggtggaagccaaccagccagtcagcatccagaactggtgcaag
aaggggcgcaagcagtgtcgcagtcacctgcacatcgtggtgccctaccgctgcctggtg
ggagaatttgtgagtgacgccctgctcgttcctgacaagtgcaagttcctgcatcaggag
cgcatggaccagtgtgagagccacctgcactggcacactgtagccaaggagtcttgcgga
gaccgcaccatgaacctccacgactacgggatgctgttgccgtgcggcatcgaccgtttc
cgaggggtggagtttgtgtgctgccccgccgaggcggaacgtgacgccgacagcaccgag
caggacgccgacgattccgatgtctggtggggcggagcggagaccgactactctgataac
agtatggtgcgagagccagagccagcggagcagcaagaggaaaccaggccatctgtggta
gaggaggacgtggaggaggaggaggaagtggccgaggaggacgaggaggaagaagaagag
gaggaggaagaggaggacctgctggataacgaccaggacggagacggagaggaggacgag
gaggtggtggaggacgaggtagaggaggaggaggaggagggagacgaagacattgtcgac
actctcgacgacaacgatgacgccgacgagcccaccaccaacgttgccatgacgaccacc
accaccactaccactgagtctgtggaagaggttgtcagggaggtgtgctgggccaatgct
gagactggtccgtgtcgggccttgctgccccgctggtactttgaccgtcaggaaggccgc
tgtgctcagtttatctacggcggctgcggaggcaacaggaataactttgagtcagaggag
tactgcctgtctgtctgcagcagcgtcttacccacagccacgcccagctcccccgacgcc
gtggaccactacctggagacgcccgccgatgaaaacgaacacgcccacttccagaaggcc
aaagagagcttggaggccaaacaccgtgaaaggatgtcccaggtgatgagagaatgggag
gaggctgagagggaggccaagaatcttccacgccctgacaagaaggctgtcatccagcgt
ttccaggagaaggttgaggcactggagcaggaggcggccagcgagaggcagcagctggtt
gagacccacatggccagagtggaggctctgctcaacgaccgccgccgcctggctctggag
agctacctgaccgccctgcagcaagacccacccaggccccgtcacgtcttcagcctgctg
aagaagtacgtgcgtgccgagcagaaggacaggcagcacaccctcaaacactttgaacac
gtccgtatggtggatcctaagaaagctgcgcagatcagacctcaggtgctgacccacctg
cgtgtcattgaggagcgtatgaaccagtctctgggacttctctacaaggttccaggtgtg
gccgatgacatccaggaccaagtcgagctcctgcagagggagcaggcggagatggcccag
cagctggccaacctgcagacggacgtgagagtgagctacggcaacgacgccctgatgccc
gatcgggagctcggagacggacggaccgaccttttgcctcaggaggacacgctgggcctg
gggggagtcggcttcatccaccccgagagcttcaaccagcccaacaccgagaaccaggtc
gagccagtggactctcgccccaaccttgacagaggcatccctacacggccagtgaatgga
atgaagatggaagctattcctgaactccggatggagacggaggacagacagagcactgaa
tatgaagttcaccaccagaaactggtcttcttcgctgaggatgtgggctccaacaagggc
gccatcattggcctgatggtcggaggcgtcgtcatagcaaccgtgatcgtcatcaccctg
gtgatgctcaggaagaagcagtacacctccatccaccacggagtcatcgaggtggatgct
gccgtcacccccgaggagcgccacctgtccaagatgcagcagaacggttacgagaaccca
acctacaagttctttgagcagatgcagaactga
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