Scomber scombrus (Atlantic mackerel): 133977319
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Entry
133977319 CDS
T10651
Symbol
hcn4
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
KO
K04957
hyperpolarization activated cyclic nucleotide-gated potassium channel 4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
133977319 (hcn4)
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
133977319 (hcn4)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Ion_trans_2
LPD1
Motif
Other DBs
NCBI-GeneID:
133977319
NCBI-ProteinID:
XP_062271419
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All DBs
Position
1:complement(11569385..11636543)
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AA seq
1469 aa
AA seq
DB search
MQTVRLHSSMRKRLYSLPQHIGQKASIMGEEDADKDTRRKSIRMKPLPSPTSGGSCKGIG
ETKSGESVIMETDIGRPMKTSSNGDCRRFRGSLSSITSRHVHDSDSAEERRLITEGDVTP
SEESPPGAIGDGPPDQGAQGASGGGGTQNDSQDQQSGFIKLDGIDQILPDDERLYQAGFM
HRQFGAMLQPGVNKFSLRMFGSEKAVEREQERVKSAGFWIIHPYSDFRFYWDLTMLLLMV
GNLIIIPVGITFFKDEHTPPWIVFNVVSDTFFLMDLVLNFRTGIVKEDNTEIILDPQQIK
IKYLRSWFVVDFISSIPVDYIFLIVETRIDSDFYKTARALRIVRFTKILSLLRLLRLSRL
IRYIHQWEEIFHMTYDLASAMVRIVNLIGMMLLLCHWDGCLQFLVPMLQDFPADCWVSKN
KMVNDTWGQQYSYALFKAMSHMLCIGYGMYPPVGMTDVWLTILSMIVGATCYAMFVGHAT
ALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQRIHDYYEHRYQGKMFDEESILGELN
EPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLKFEVFQPGDYIIREGTIGKKMYF
IQHGVVSVLTKGNKETKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLE
EYPMMRRAFETVALDRLDRIGKKNSILQHKVQHDLSSGVLNYQENEIIQQIVQHDRDMAH
CAHLMQNAPPRTPPSPTPVIWAPLIQAPLQAAAATTSVAIALTHHPHLPPTLFRPPLSVL
GSLKDPPSRLKKFHTFVPSSTAPGSAGDSPSSTPCKLRTGVDMPLLASFRAQHMTSGSGA
TGSSQQASSSGGQRGPSGTGSGFSGGGGGASAFPFGPYSSSGSPSSSMAQLHPLPRQQQP
FRSSTPPLSNLFHQGSAGGSTGSGISGSAVGACGGATGWSSGGAVGGLVEGASGGDATWT
REDFTTAATEATSEGHFGFGGATSRLVRGISGESMGGISEGSVGGACGRSAGGASGGSVG
GITCGSVGDVTRRSMAGVSRGSIRRASRGSVGGASGDLLVTTTTGGSLRRASGESVRGTS
RELLVETTTIRSLGSTSEGSMGGASGGSFGGVSGDFIIGNPGGSLGRASERSISSHMGGG
LSGPGGGLIGVHSSRAAGGTVGSHLGGSSACPVGGASGGITAGLIGSSRCQSPISTGSSS
PLPIQILHSQPPPKPPQVAPLQQFAGGGRTTSGLNLFHSPPQGSPSSSRGHHGQQPAEGS
PSSLSHFGLAGLQSGFLPHQMSLERSALASLAQYGSANASPCLTPVAPSPTIQSPVAGRT
FHYNDPSSTTGSHSSLLMPQSSLPSQLPSQPHTTGRDSPLGRFSEDLKLLSSSHPSLPQE
VAQALGHQTPRSLVETGYYPSPFSSPTLVPKPCSSVPGHMTPPIQLSPGHPHQTQSPRTS
PALPLRRGSAPYSSDLEPQTVRSKLPSNL
NT seq
4410 nt
NT seq
+upstream
nt +downstream
nt
atgcaaactgtcaggttgcactcctccatgcgtaaaaggctctacagtttgccacaacac
attggacagaaagcatctataatgggtgaagaagacgcagacaaggacacccggaggaag
agtatcaggatgaagcctctgccgtcgccgacctctgggggaagctgcaaaggcatcggg
gagaccaaaagtggggagtctgtgatcatggagacggacatagggagaccgatgaagacc
agctcaaatggagattgccggagatttcgaggcagcctctcgtccatcacaagtcggcat
gtgcacgactcggactcggcggaggagagacgcctcatcaccgagggggatgtcactccg
agcgaggagagcccccccggagccatcggtgatgggccgccggatcaaggcgcgcaaggg
gccagcggtggcgggggtacccaaaacgattcccaagaccagcagtcagggtttataaag
ttggatggcattgatcaaattctgccggatgacgagagattatatcaagctgggttcatg
cacagacagtttggggcaatgcttcagccaggggtcaacaagttctccctgaggatgttt
ggaagtgagaaggcggttgaacgagagcaagagcgggttaaatccgccggattttggatt
attcacccctacagtgatttcaggttttactgggacttgaccatgctgctgctgatggtg
ggcaacctcatcatcatccccgtgggcatcacattcttcaaggatgagcacacgccaccc
tggatcgtgttcaatgtggtctctgacaccttcttcctcatggacctggttctcaacttc
aggacaggtatcgtcaaggaggacaacacagagatcatcctggacccacaacagatcaag
atcaagtacttgcgaagctggtttgtggtggacttcatctcctccatccctgtggactac
atcttcctcatcgtggagacgcgcatcgactcagatttctataagacagcgcgcgcttta
cggattgtccgcttcaccaagatcctcagtttgctgcgactgctgcgcctctcaagactc
attcgctacattcaccaatgggaagagatcttccacatgacgtatgacttagccagcgcc
atggtgaggatagtcaacctgattggcatgatgctgctcctgtgtcactgggatggctgc
ctgcagttcctggtgcccatgctgcaggacttccccgccgattgctgggtgtccaaaaat
aagatggtgaatgacacatggggacagcagtactcctacgcacttttcaaagctatgagc
cacatgctgtgtattgggtatggcatgtaccccccggtgggcatgacagacgtgtggctg
accatcctcagcatgattgtgggcgctacctgctacgccatgtttgtgggccatgccacc
gcactaatccaatccctagactcgtctcgacggcagtaccaggagaagtacaaacaggtg
gagcagtacatgtcgttccacaagctgccagcagatatgaggcagagaatccatgactac
tatgagcaccgttaccagggcaagatgtttgacgaggaaagcatcctgggagagctgaac
gagccactccgagaggaaataatcaactttaactgtcgaaaactggtggcctcaatgcct
ctgttcgccaacgctgaccccaactttgtcacctccatgctcaccaagctaaagttcgag
gtgttccagcctggggattacatcatcagggagggcaccattggcaagaaaatgtacttc
atacaacatggggtcgtcagcgtactgaccaaaggcaataaagagaccaagctttccgac
ggctcctactttggggagatttgtttgctgacacgaggcagaagaacagccagtgtccga
gcggacacatactgtcgtctgtactcattgtctgtggataacttcaatgaggtgctggag
gagtatcctatgatgagaagggcctttgagactgttgccctggacaggctggaccgtatt
ggcaagaaaaactccatcctgcagcacaaggtacagcacgacctcagctctggtgtactc
aactaccaggagaatgagatcatccagcagattgtgcagcatgacagggacatggcccac
tgcgcccacctcatgcagaacgccccaccccggacacctccctcacctacccccgtcatc
tgggccccactgatccaggcccctctccaggcagcagccgcaaccacctcagtagccatt
gccctgacacaccatccccacctcccaccaacgctcttcaggcctccactttctgttctg
ggttcccttaaggaccctccaagtcggcttaagaagtttcacacatttgttccttcatcc
acagctcctggatctgcaggggactccccctctagcacaccctgtaaactgcgcactggg
gtggacatgccattgctggcctcttttcgggcccagcacatgacatcaggatctggggca
actggctctagccagcaggcctcaagtagtggaggccaacgtgggcctagtgggacaggg
tctgggttcagtggaggtggaggaggggcctctgccttccccttcggaccatactcatcc
tctggttcaccctcatctagtatggcccagttacacccactacccaggcagcaacagccc
tttcgctccagcaccccaccattgtcaaacctcttccaccaaggatctgcaggtggaagc
acagggtcaggaataagtggcagtgcagttggagcttgtggtggtgcaacaggttggtct
tcaggtggagcagttggaggtttggtggaaggggccagtggaggagatgctacctggact
agagaggactttacaactgcagcgacagaagcaacttccgaggggcactttgggtttgga
ggagctactagtagattagtaagagggatctcaggggaatcaatgggagggatttctgaa
ggatcagttggtggtgcttgtggcaggtcagcgggtggggcctcaggtggatcagtgggg
ggcattacctgtggctcagttggagatgtaaccaggagatcaatggcaggggtttctaga
ggatcaataagaagagcttctaggggatcagtgggaggggcctctggagacttactggtt
acaacgaccactggaggatcattgaggagggcttctggcgaatcagtacgagggacttct
agagaattactggtagaaacaaccactataagatcattggggagtacttctgaggggtca
atgggaggggcctctggaggatcctttggaggggtttctggtgattttattataggaaat
cctggaggatcattgggaagggcttctgaaagatcaatatctagccatatgggaggaggt
ttgagtgggccagggggaggtttgattggagtccacagtagcagagcagcaggaggcaca
gtagggagtcatttaggagggtcttctgcttgtcctgtaggcggggcttctggtggaatc
acagctggacttattggttcttcccgttgccagagtcctatttctaccggctcatccagc
cctttgcctattcaaattctccatagccagccacccccaaagcctcctcaagtggctcct
ttgcagcagtttgctggaggaggtaggactaccagtggcttaaacctcttccactcccct
ccacaaggctccccatcctctagtagaggacatcatggccaacagcctgctgagggctcc
ccatcatccctcagccattttggcctggcaggcctccaatctggcttcctgcctcaccag
atgtcccttgagaggtctgccctagcctccctagcccagtacggctcagcaaacgcctct
ccctgccttaccccagtcgcacccagccctactattcaaagtccagtggcaggcaggact
ttccactataacgacccctctagtacaacaggatcccacagttctctgctcatgcctcag
tcttctctcccttcacagcttcccagccagccacacacaacagggagagattctccactg
ggccgcttttcagaggacctaaagctattatccagctcacacccatctctgccccaggag
gtggcccaggccttaggccaccaaacacctcgctccttggtggaaactggatactaccct
tcacccttctcctcacccactcttgtgcccaaaccctgtagctcagtgccagggcacatg
actcctccaatccagctgtctccggggcaccctcaccagactcagtcccccaggacctcc
ccggccttgcctctacggaggggctctgctccctactcatcagatctagaacctcaaact
gtccgctctaaactcccttccaatttgtga
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