KEGG   Scomber scombrus (Atlantic mackerel): 133977446
Entry
133977446         CDS       T10651                                 
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b
  KO
K19719  collagen type II alpha
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510  Focal adhesion
ssco04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    133977446 (col2a1b)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    133977446 (col2a1b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ssco00536]
    133977446 (col2a1b)
Glycosaminoglycan binding proteins [BR:ssco00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   133977446 (col2a1b)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 133977446
NCBI-ProteinID: XP_062271603
LinkDB
Position
3:22208900..22258184
AA seq 1490 aa
MFSIMDSRTLLLLVATQVCLLAVVRCQEDDQEDAFTCIQDGQRYSDKDVWKPEPCRICVC
DTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADTSPSIGVPGAKGQKGEPGDITDVVG
PRGPAGPMGPPGEQGLRGSRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQSG
PMGPRGPSGSSGKPGDDGEAGKPGKSGERGPTGPQGARGFPGTPGLPGIKGHRGYPGLDG
AKGETGAVGSKGESGASGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPVGAPGFPGSPGTKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIPG
SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPAG
LQGATGPQGEEGKRGPRGEPGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPSG
ASGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGSSGEDGRPGPPGPQGARG
QPGVMGFPGPKGATGEPGKSGEKGLSGAPGLRGLPGKDGETGSAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGGAGATGPRGERGFPGERGAAGPQGLQG
PRGLPGTPGTDGPKGAIGPSGSAGAQGPPGLQGMPGERGGAGIPGPKGDRGDIGEKGPEG
ASGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFAG
PPGSDGQPGAKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPSGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGPSGEKG
DAGEDGPPGPLGPSGPQGLGGTRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGPGDRG
PPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPVGAPGAPGAHGASG
PVGPTGKQGDRGESGAQGPSGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFTG
LQGLPGPPGQSGDQGATGPAGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRGGETG
PAGPPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDVEVDA
TLKSLNNQIENIRSPEGSRKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTVDAIKVFCNM
ETGESCVHSKPSTIPRKNWWSSKSKEHKHIWFGETMNGGFHFSYGDESLAPNTAAIQMTF
LRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDG
CTKHTGQWGKTVIEYRSQKTSRLPIVDLAPMDIGGSDQEFGVDVGPVCFL
NT seq 4473 nt   +upstreamnt  +downstreamnt
atgttcagcattatggattcaaggactctactgctacttgtagcaacccaagtctgtcta
ttagccgttgtgagatgtcaggaggacgaccaggaggatgcttttacctgtatacaagat
ggacagcgctatagcgacaaggatgtatggaaaccagagccttgtcgcatctgtgtgtgt
gacactggaaccgtcctgtgcgatgaaattgtctgcgaggagcttaaagactgccccaaa
cctgaaatcccattcggagagtgttgccccatctgcgcagctgacacatctccatccatt
ggagtacctggagctaagggtcagaaaggcgaacctggagacattaccgatgttgtagga
ccaagaggaccagctggcccaatgggcccaccaggagagcaaggactccgcggatcaaga
ggagataaaggagacaagggatcccctggtccccgtggcagagatggtgagcctggcacc
cctggaaaccctggcccccctggacctccaggacctaatggaccccctggccttggtgga
aacttcgctgctcagatggctggtggttttgacgagaaggctggcggcgcacagatgggt
gtgatgcaaggaccaatgggccctatgggtcccagaggaccacctggccccagcggatca
cctggcccacaaggtttccaaggtaacccaggagaagctggagagcccggacaatctggt
cccatgggtccccgtggtccctctggatcttctggaaaacctggagatgatggtgaagct
ggcaaacctggaaaatcaggggagcgtggacctactggacctcagggagctcgtggtttc
ccaggaactcctggcctgcctggcatcaagggacacagaggttacccaggtcttgatggt
gcaaagggagagaccggagctgttggttctaagggtgagtctggtgcttctggagagaat
ggcgctcctggaccaatgggaccccgtggtttgcccggtgagagaggtcgtcccggaccc
agtggagctgctggagcacgtggaaatgatggcttgcccggtcctgctggtcccccaggc
cctgttggtcctgttggagctccaggcttccctggctctcctggtacaaagggagaggcc
ggtcctactggtgctcgtggacctgagggtgctcagggaccccgtggagagtctggcaca
cctggatcacccggaccttctggcgcttctggaaaccccggtactgatggtatccctgga
tctaaaggatcagctggtgctcctggtatcgctggtgcgcctggtttccccggacctcgt
gggcctcctgggcctcagggagcaactggacctctcgggccaaaaggaacatctggagac
ccaggtattccagggttcaagggagaggctggacccaaaggagaaattggaccagctggt
cttcagggagcaacaggcccacaaggagaagaaggcaagagaggacccaggggtgagccc
ggtgctgctggaccacttggacctcccggagagagaggatccccaggtaaccgtggtttc
cctggacaagatggtcttgctggtcccaagggagcccctggtgagcgtggaccctctggt
gccagtggtcctaagggtgctaacggtgaccctggccgtcctggagaacctggtctgcct
ggtgccagaggtcttaccggacgtcctggtgatgctggtcctcaaggcaaagttggacct
tctggatcctctggcgaggatggtcgcccaggaccccctggcccacagggagcccgtgga
cagcctggtgtcatgggattccctggacccaagggagcaactggtgagcctggcaagtct
ggtgagaaaggtctgtctggagctcctggtctgagaggtttgcctggcaaagatggagaa
actggctctgctggaccccccggccctgctggccctgctggagagagaggagagcaagga
cagcctggtccctcaggcttccagggtctgcctggaccacctggcccacctggtgaggga
ggcaagcccggagaccagggtgttcctggggaggctggaggtgctggtgctactggaccc
aggggagagcgtggtttcccaggagagagaggagctgcaggtcctcagggtcttcaggga
ccacgaggtctgcctggaactcctggaacagatggacccaagggagccattggaccttct
ggttctgcaggagctcagggaccccccggcctgcagggtatgcctggagagagaggaggt
gctggcattcctggacccaaaggagacagaggtgacattggagagaaaggacctgaaggt
gcttccggcaaagatggtgccagaggtctcactggtcccatcggtcctcctggccctggt
ggtcccaatggtgagaagggtgaatctggacctgctggtccttctggtgctcctggtacc
cgtggtgctcctggtgacaggggtgagactggaccacctggacctgctggatttgctgga
ccacctggttctgatggtcagcctggagccaagggagagcagggagaatctggacagaag
ggtgacgctggtgcccctggaccccaaggaccatctggtgcccctggacctgccggtcct
acaggtgtttctggacctaaaggtgctcgtggtgctcagggacctcctggtgccactggt
ttccctggagctgctggccgcgtcggaccccctggtcccaatggtaatcctggacctgct
ggtccttccggccctcctggtaaagatggacctaagggtgtgagaggagacggtggaccc
ccaggcagacagggtgacgctgggcttcgtggtcccgctgggccttcaggagagaaggga
gatgctggagaggatggtccccctggtcccctaggtccttcaggtcctcagggtttgggt
ggcacacgtggtattgtgggtctacctggacagcgtggtgagagaggtttccctggtctg
cctggaccttctggtgagcccggaaagcaaggagcttctggtggccccggagaccgcgga
ccccctggacctgttggaccacctggactcactggaccagcaggagagcctggcagagag
ggcaaccccggatctgatggacctcctggtagagatggtgctactggaatcaagggtgat
cgtggtaacactggtcctgttggtgctcctggtgctccaggcgcccatggtgcttctggt
ccagttggccccaccggcaaacagggagacagaggagagtctggtgcacaaggaccttct
ggacccccaggacctgctggagccagaggaatgcctggaccccaaggacctcgcggggac
aagggtgaagctggagagtctggtgagagaggacagaagggacacagaggcttcactggt
ctgcagggtctgcccggacctccgggtcaatctggagaccagggtgctactggacctgct
ggaccttctggacaaagaggaccacctggacctgttggccctgctggaaaggacggttca
aacggtctgccaggacccattggaccccctggacctcgtggtcgcggtggagagactggt
cctgctggtcctcctggaaacgccggaccccctggtcctcctggtccccctggccctggc
attgacatgtctgccttcgctggcctgggtcagactgagaagtcccctgatcctctcagg
tacatgagagccgaccaggcctctggaaacctccgccagcatgatgttgaggtagacgcc
acgctcaaatccctcaacaaccagattgagaacatccgcagccccgagggatccaggaag
aaccccgctcgcacctgcagagacctgaagctctgccatcctgactggaagagcggagac
tactggattgatccaaatcagggctgcaccgttgatgcaatcaaggtcttctgcaacatg
gagacaggggagtcctgcgtccattccaagccttccaccatccctcgtaagaactggtgg
tccagcaagagcaaggagcacaaacacatctggttcggagagacaatgaatggaggattc
cacttcagctacggtgatgaaagcctggcacccaatactgctgccatccagatgactttc
ctgagactgctgtccaccgaggcgtctcagaacctcacctaccactgtaaaaacagcgtg
gcctacatggatgcctcaacgggcaacctgaagaaggccgtgctgctgcagggctccaac
gatgtggagatcagagccgagggcaacagccgcttcacatacagcgtgatggaggatggt
tgcacaaaacacacgggacagtggggcaagacagtgattgaatacagatcacagaagacc
tctcgtctgcccattgtggaccttgcccccatggatatcggtggatcggaccaggagttc
ggagttgatgttgggccagtctgcttcttgtaa

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