Scomber scombrus (Atlantic mackerel): 133977574
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Entry
133977574 CDS
T10651
Name
(RefSeq) integrin alpha-5-like
KO
K06484
integrin alpha 5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03266
Virion - Herpesvirus
ssco04145
Phagocytosis
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04517
IgSF CAM signaling
ssco04518
Integrin signaling
ssco04810
Regulation of actin cytoskeleton
ssco04820
Cytoskeleton in muscle cells
ssco05100
Bacterial invasion of epithelial cells
ssco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
133977574
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133977574
04517 IgSF CAM signaling
133977574
04518 Integrin signaling
133977574
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
133977574
09144 Cellular community - eukaryotes
04510 Focal adhesion
133977574
09142 Cell motility
04820 Cytoskeleton in muscle cells
133977574
04810 Regulation of actin cytoskeleton
133977574
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
133977574
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
133977574
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
133977574
04515 Cell adhesion molecules [BR:
ssco04515
]
133977574
04090 CD molecules [BR:
ssco04090
]
133977574
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133977574
Cell adhesion molecules [BR:
ssco04515
]
Integrins
Integrin alpha subunits
133977574
CD molecules [BR:
ssco04090
]
Proteins
133977574
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
ITGAX-like_Ig_3
Integrin_alpha
Motif
Other DBs
NCBI-GeneID:
133977574
NCBI-ProteinID:
XP_062271755
LinkDB
All DBs
Position
3:complement(6058687..6107078)
Genome browser
AA seq
1056 aa
AA seq
DB search
MGTVPGLLPSTFSWGKCCHHSVLVVPVIVAVLLQLCAAFNLDTEKRVVFTGPQGSYFGYS
VEFFTNSSSISILIGAPKANTSQPDITEGGAVYSCPWSQTNCSIIDFDKQGDQYFYINGV
NTQVEFKSHQWFGATVRSHGNSVLACAPRYYWRTEHDIPFADVTGTCYLSVDGLKTFVEY
APCRTERHGPAGQGYCQGGFSADFTKSGRVVLGGPGSFYWQGQLISATTEEIVKAYYPSY
FLLSVVGQIQTRQAQGSYDDSYLGYSVASGEFNGDDEEDFITGVPKGLMLYGLVSILNGS
DLKSVLNLTGEQMGSYFGYAVAATDINSDGMDDLVVGAPMFMRRGSNGRLEELGKVYVYL
QRGPLMLEPSQSNLLGPQAFSRFGTSLAPLGDLNQDGFNDMAIGCPYGGDDQQGLVLIYN
GYTGGLKDIPTQTLAGQWASSSFPASFGFSLRGNKDLDQNGYPDLIVGAFGTDKVVLYRA
RPIVSASASLTVQPTMFNQEEKTCELNTGNDTMAVSCVSIGFCLLANGKHLPSHLGFVAE
VQLDSVKQNQKESIRRTLFLDSQQPSLVKALNLTIGERSCHEAKIYLRGEEEFRDKLSPI
YISLNFSLDPQAPVDQHGLRPILNYQTEQLIQQKAQIQLDCGEDNICVPDLKLAVYGDRT
EVYLGDENSLSMTFNARNEGEGGAYEAELYVVLPPEADYSGIARNNVSLTQLTCSYAAEN
QTRYIVCDLGNPMKPGTSLWAGLRFTVPRLKDTHNTVQFELQIRSKNVNNSESEVVLYEL
DVAAMADVILQGVSRPDKVIFPTPNWSQSQSLMEEQDVGPELQQVYELVNNGPSVVSQST
LEVRCPLRAHNHELLYPVEVVTEGPLRCSSNHTFNALKLKLQPPAAPSPTSLKSNTEHHI
QRREVYRDPLAEHGNLTCSAVECWQLQCNVGLLEKGASVILSVRSRLWTETFMERPHKQF
LLECSVQYKVDRMPYSIPPKYKPSGSRKVVTAVMWNKPDSLFYVPVWIIILAVLAGLLLL
SLLIYLLYKMGFFKRSDPYGTTMEKALLKPQASSEA
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccgttccaggacttctaccttctaccttttcatggggaaaatgttgtcatcac
agcgtgctggttgtacctgtaatagtggcggttctgctccagctttgcgcagcttttaac
ttggacacagagaaacgcgtcgtctttaccggaccacagggaagttatttcggttattct
gtggagttcttcactaactcatccagtatcagcattttgatcggcgctccaaaagccaac
accagccagcccgacatcaccgaaggaggagctgtgtactcgtgcccctggagccaaact
aactgcagcattatcgactttgacaagcaaggtgatcagtatttttatataaatggcgtc
aacactcaggttgagttcaagtcccatcaatggtttggagctactgtgcgttcccatggc
aacagtgtcttggcctgtgctcccaggtattactggaggaccgaacacgacatacccttc
gccgatgttacaggaacctgctacctctctgtagacggtctcaaaacgtttgtggagtac
gccccctgccgaacagaaagacatggacctgctggacagggatattgtcaggggggattt
agtgctgacttcaccaagagtggacgggttgtgcttggaggaccaggcagcttttactgg
caaggtcagctcatttcagccactacagaggagattgtgaaggcctactacccctcttac
tttctgctgtcagtcgtcggccagattcagacacgacaggcgcaggggagctatgacgac
agttacctgggttactctgtggctagtggcgagttcaacggggatgatgaggaagatttc
atcacaggagttccgaaaggcctcatgctgtatggtttagtgtccatattaaacggaagt
gatctaaagtctgtgctcaacttgacaggagagcagatggggtcctactttggctatgca
gtggcagccactgacatcaacagtgacggtatggatgacctagtggtgggagctccaatg
ttcatgcgtcgagggtccaatgggcgcctggaggagctgggtaaggtgtatgtgtacctc
cagaggggccctctgatgctggagcccagtcagtccaacctccttggtccgcaggcattc
agccggtttggcacatcgctggctcctttgggcgacctcaatcaagatggattcaatgac
atggccattggctgtccctatggaggagatgaccagcagggattggttcttatttataat
ggttatactggaggactaaaggacatacccacccagactcttgctggccaatgggcttcc
agctctttccccgccagttttggcttttctctgcgaggcaacaaagatctggatcaaaac
ggttacccagatttaattgttggtgcttttgggactgacaaagtcgtgttgtacagagct
cgtccaatagtgagtgcaagcgcctctctcacagtgcagccaaccatgttcaaccaggaa
gagaagacttgcgagctgaacactgggaatgacaccatggccgtatcctgtgtcagcatc
ggtttctgcctgctggctaatgggaagcacctcccatctcatctaggctttgtcgcagag
gttcagttggacagtgtgaagcagaaccagaaagagtccatcaggaggactctgttccta
gacagccagcagcccagtctggtgaaggccctcaacctcaccattggagaacgctcgtgc
catgaagctaagatctatctccggggtgaagaggaatttcgggataaactctctccaatt
tacatcagcctgaactttagtctggatcctcaagccccagtggaccagcatggtctcaga
cctatcctgaactatcagacagagcagcttatacagcagaaggcccagattcagctcgat
tgtggagaggacaacatctgcgtccctgacctgaagttggctgtttatggtgacagaacg
gaggtttacctgggtgatgaaaactccttgagcatgaccttcaatgccaggaacgagggg
gagggaggcgcgtacgaggccgagctctacgtggtgcttcccccggaggccgactacagc
gggatagcgcgcaacaatgtgagcctgactcagctgacgtgcagctatgcagcagaaaac
cagacacgctacattgtgtgtgatctgggaaaccccatgaagcctggtaccagtttatgg
gctggcctccgcttcactgtgccaagactgaaggacactcacaacaccgtgcagtttgag
ctccaaatacgaagtaaaaatgtgaataattcagagagtgaagtggtgctgtacgagctg
gacgtggctgcgatggctgatgtcattctccagggcgtttctcgaccagacaaagtcatc
tttcccactccaaactggagtcagagtcagagtctgatggaagagcaggacgtcggccct
gagcttcagcaggtctatgagttggtgaataatggtcccagtgtggtcagccagtccaca
ttagaggtgagatgtcctctgagggctcacaaccacgagctgctctacccagtggaggtg
gtcaccgaggggccgctccgctgctcctccaatcacaccttcaacgcactaaaactcaag
ctccagcctccagcagcacccagtcccacgtcactgaaatccaacactgagcaccacatc
cagaggagggaggtgtacagagatcctctggctgaacatggaaacctgacctgctctgca
gtggagtgctggcagctgcagtgtaatgttgggctgttggagaaaggagccagtgttata
ctgagtgttcgctccagactctggactgaaaccttcatggagaggcctcataagcagttt
cttcttgagtgctctgttcagtacaaggtggacaggatgccttattctattcctcccaaa
tacaaaccatcgggatccagaaaggtggtgacggctgtgatgtggaacaagccggacagt
ctgttctatgttcctgtatggatcattatcctggctgttctagctggactgctattactc
tccctgctcatatatctactgtacaagatgggcttctttaaaaggtcagatccgtacggt
acgaccatggagaaggccctgctcaaaccccaggcgtcctctgaagcctag
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integrated database retrieval system
