Scomber scombrus (Atlantic mackerel): 133977763
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Entry
133977763 CDS
T10651
Symbol
cyldb
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04217
Necroptosis
ssco04622
RIG-I-like receptor signaling pathway
ssco04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
133977763 (cyldb)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
133977763 (cyldb)
04625 C-type lectin receptor signaling pathway
133977763 (cyldb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssco01002
]
133977763 (cyldb)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
133977763 (cyldb)
Enzymes [BR:
ssco01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
133977763 (cyldb)
Peptidases and inhibitors [BR:
ssco01002
]
Cysteine peptidases
Family C67
133977763 (cyldb)
Ubiquitin system [BR:
ssco04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
133977763 (cyldb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
UCH
Motif
Other DBs
NCBI-GeneID:
133977763
NCBI-ProteinID:
XP_062272017
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All DBs
Position
3:10298395..10305002
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AA seq
705 aa
AA seq
DB search
METKTLVMDKFFIVIRGKSRKGFCRGCIGRVEAETQRGELMGLMYGGGSSSGSPKSGGIV
KREDTYPLTRHQAQLLLYVSSASKRLELLCNPQLFTAICELSQDDLVVVRHKKGHLPALV
KNLMQIGRKENKDDLHMLGFEVELVDSECSLSSKKPAPLPLFSAADVVQVVPSYSVPLGL
HWKDGQCGGLNRKAVTRINSMPNIGSRGRQTRENHTEQSVAQIQSPSTPHVSLEMGSMVE
VVSSSGITVYGVIRWLGVPAGKTDEWAGIELDYDVNGCSDGKYGSQRYFTCKGNRALFVP
VTKCSPDSRFFNSSTGSKTPKPTETSPVPPFEESEEDPPPVLESEALSLLVGRMKGIQGH
VNSCYLDATLFSLFSSSVTLNNICQKPADREQPLTCTLRRIVNCLRRQGFVPAESVMNFR
KQLGCETFRTEEKDPEEFINVLFQKVLRVEPLLKLRSRGETSQGAYTFQIFLEKEQMVQM
PTVQQLLDTSCLSCDLKFEEMPSCLMVQMPRFGNKYKMFSHIIPSMELDITDLLYYSPRE
CFVCGHLAEHECLQCLPDRKLQPGRIKQYCTTCNTQVHTHPSRQGHSPKALAVPADVPTD
APVPRHMMQLFAVLCIQTSHYVSFVKYGPDPHSWIFFDSMADRCGDDQSGYNIPEIRACP
ELGDFLSQSEEELARANPSQAPELTRRLLCDSYMFLYQNPATPLS
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggagaccaaaactttagtcatggataagtttttcatcgtgatacgcgggaagtcgagg
aaaggcttctgccggggatgtattggccgtgtggaggcagagacgcagcgtggagagctg
atggggctgatgtacggcggaggcagcagttcggggagccccaagagcggaggcatcgtg
aagagagaggacacctaccctctgacccgccaccaggcccagctactgctctacgtttcc
tccgcaagcaagcgcctggagttgctgtgtaacccccagctgttcaccgccatctgcgag
ctgtctcaggacgacctggtggttgtgaggcacaagaaaggacacctgcccgcgctggtg
aagaacctgatgcagattgggaggaaagagaataaggatgatctgcacatgcttggcttc
gaggtggaattagtggacagcgaatgtagtttgtcatccaagaaacctgctcctctgccc
ctgttcagtgccgcagacgtcgtccaagtggtcccatcttactccgttcccctcggactg
cactggaaagacggccaatgtgggggtctaaacagaaaagcggtgacgcgcatcaactct
atgccaaatattgggtctcgtggacgacaaacgagagagaaccacacagaacagagcgtc
gctcagattcagagtcctagcacacctcatgtgtctctggagatggggtccatggtggag
gtggtgtcaagctcaggcatcacagtgtatggggtcatcaggtggctgggggtccctgca
ggaaagactgatgagtgggctgggattgaattggactatgatgtgaatggctgctctgat
gggaagtatggaagccagagatatttcacctgcaaagggaaccgggctttgtttgtccct
gtcacaaagtgcagccctgatagcaggtttttcaactcctctacaggaagcaagaccccc
aaacccaccgaaacctctccagttcctccatttgaggagtcagaggaggatccaccacct
gtccttgaatcagaggccttgtctttgttagtgggaagaatgaaagggattcagggccac
gtcaactcctgttaccttgatgccacactcttcagtctgttcagctcatctgtgaccctg
aataatatctgccagaagcctgctgacagagaacaacccttaacttgcactctgagaaga
atagtcaactgtttacgcagacaaggttttgtgcctgctgagagtgtgatgaatttccgc
aaacagctcggctgcgaaacattccgaacagaggaaaaagacccagaagagttcatcaac
gtcctctttcagaaggtgcttcgtgtggagccactccttaagctcagatcaagaggagaa
acatctcagggtgcctacacctttcagatctttctggaaaaagagcagatggtacagatg
cccactgtccaacagctgctggatacatcctgtctgtcatgtgacctcaagtttgaagag
atgccatcctgtctaatggttcagatgccaagatttggaaacaagtataagatgttttct
cacatcattccctccatggagctggacatcacagatctgctgtactactctcctcgggaa
tgctttgtctgtgggcatttggcagagcacgagtgcctccagtgtctaccagatcgcaaa
ctgcagccagggagaatcaaacagtactgcactacctgcaacacacaggtgcacactcat
ccctcacggcagggtcactcccccaaagctctcgcagtaccagcagatgtacccactgat
gcacctgttcccaggcacatgatgcagctgtttgctgttctctgtattcaaaccagccac
tatgtgtcctttgtcaaatacggccctgacccccactcttggattttctttgacagcatg
gcagacagatgcggtgacgatcaaagtggctacaacattccagagattcgagcttgtccg
gagctgggtgacttcctgtcccagtcagaggaagagctggctcgtgccaacccctcccaa
gctcctgaacttacgcgcaggctgctgtgtgactcctacatgtttttataccagaaccca
gcaacgccgctttcataa
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