Scomber scombrus (Atlantic mackerel): 133977796
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Entry
133977796 CDS
T10651
Symbol
nfasca
Name
(RefSeq) neurofascin homolog (chicken) a
KO
K06757
neurofascin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04514
Cell adhesion molecule (CAM) interaction
ssco04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
133977796 (nfasca)
04517 IgSF CAM signaling
133977796 (nfasca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133977796 (nfasca)
Cell adhesion molecules [BR:
ssco04515
]
Immunoglobulin superfamily
L1 family
133977796 (nfasca)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
ig
fn3
Ig_2
Bravo_FIGEY
V-set
Ig_VEGFR-1-like_5th
FN3_DSCAM-DSCAML_C
C2-set_2
Ig_PDGFR_d4
Fn3_ROS1
BiPBP_C
MUC7
DUF3157
Motif
Other DBs
NCBI-GeneID:
133977796
NCBI-ProteinID:
XP_062272066
LinkDB
All DBs
Position
3:2397332..2473812
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AA seq
1358 aa
AA seq
DB search
MSGHCGHAALALVSLLILLWREAAPIEVPQDPKVLQDLKQPPTIVKQSVKDYIVDPRDNI
IIECEAKANPLPTFSWRRNGKFFNIGKDPRVTMRKRSGTLEIGFRNGGRPEDYEGEYQCL
ADSDLGRAISNKILLRVSKAPLWPKEVLEPMMVPEGHPVVLPCNPPPGLPPPFTFWMNSA
MTPIPQDKRVSMGLNGDLYFSNVLAQDAHTDYSCNARFLFTHTIQQKNPFTLKVQTSRRV
AESTPTFLSPTGTESSKMVLRDEQLLLECIAAGLPTPAIKWFKKGGDLPARKVKFENYNK
TLKIINVSEEDAGVYVCMANNYLGSIRHSIFVEVKAAPYWLDKPTNLVLAPDENGRLVCR
ANGNPKPNIQWLMNGNPINTSVPHPSRQMMGDTIIFRSVQVGSSAVYQCNASNQHGYLLA
NAFVSILDMAPRMLGPKNQLIKVIENNRTFLDCPFFGSPLPELRWFKNGQGSGLDGGQYR
VYINGSLEIKRARAEDEGTYTCVANSIMGTAENQVRLEVKEPTRIIRVPEHQSAIRGSVA
RFECKVKSDPSLPIAVAWWKDDKPLYLGWRIKKDEESLTIPNINEGDEGTYTCTVKSEID
EDSASARLTVLEEASLNPSVSSAFPPDRPDPPMDLDLSDPAARSVRLTWIPGNDHRSPIT
EFLVQFEEDRWEPGRWQNLSSYPGDLNSVILQLAPFINYQFRVIAINAVGQSQPSRPSPR
YQTSGAAPDTIPRGLRGWGSKKDNMEITWEPLIDLERNGPNLHYSVWWKRKDSGEEWSNV
TTMESKHVVQNTDTYVPYELKIQARNEFGSGPESNMVTGYSGEDKPTAPPTDLRVSKVDD
IKANIHWKPVDMNTVQGEFKEYRLYYWRESSLVPGLVFSKENKTKGFYSTMAEPSGIVTD
LVPYSRYKMLMVVANNGYEGPPSNMVDFATKEGVPDAPRVFRINRRTFDMIHLEWEKPLE
PNGILIGYQLKYHTVNGSRSGRPQLQTFLPNVTDFRLRLPDRSTRYKFSLSALTQVGAGE
VFAEESPHFTNEENFTDATGLVELTDASVASALTPTPPPIAPPSPTTIAPTTISTSTTTT
PTTTTPTTTTTTTTTTTTTEATTTTTTPAVVVTFKRIDENMPGTCLASGLEIWNLTVEPN
SNYANVSWKHNFPAGSSEFVLEFTLDSNNSVKIVPVKQQPPITVADLIAGAKYHLRVYSH
EHNNIRSDPVTFKTKTAYIDQVDIATQGWFIGLMCAIALIILILLIVCFIKRSRGGKYPV
RDKKDLPLDPVDQKDQDGSIDYHSDEDNKPLQGSQTSLEGNVKESDDSLVDYGEGGDGQF
NEDGSFIGQYTVKKDKDETEGNESSEATSPVNAIYSLA
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggcattgtgggcatgcagccctggctctcgtgtcgttactgatactactgtgg
cgtgaggcagcacccatcgaggtgccgcaagacccaaaggtcctgcaagacttgaagcag
ccccccactatagtgaagcagtcagtgaaggactacattgtggaccccagagataatatc
atcattgaatgcgaggccaaggccaaccctttgccaacgttctcatggcgaaggaacggg
aagtttttcaacatcgggaaagatccccgggtgacgatgcggaaacgctctggaaccctg
gagatcggtttccgcaacggaggacgaccagaggactacgagggagagtatcagtgttta
gccgacagtgacctgggaagggccatttccaacaaaatcctgttgcgggtctccaaggct
cctctgtggcctaaagaggtgctggaaccaatgatggtgcctgaaggccacccggtggtc
ctcccctgcaaccccccaccgggcctgcctcctccattcaccttctggatgaacagcgct
atgaccccaatccctcaagataagagagtatctatgggtctcaatggagacctctacttc
tccaacgttttggcccaagacgcccacactgactacagctgcaacgctcgcttcctcttc
acacacaccatccagcagaagaaccccttcacactcaaagttcagacaagccgcagagta
gctgagtcgacgccgaccttcctctcaccgacagggactgagagttccaaaatggtgcta
cgagatgagcagctgctgctggagtgtatcgctgctggacttcccacacccgccatcaag
tggtttaagaagggtggagacctgccggcacggaaggtgaagttcgagaactacaacaaa
accctgaagattatcaacgtgtcagaggaggatgctggggtgtatgtatgcatggccaac
aattatttaggcagcatacgccattccatctttgttgaggtcaaagcggctccttactgg
ctggacaaaccaacaaatctggtgctagccccggatgagaacgggcgccttgtgtgccgg
gccaatggcaaccctaaacctaacatccagtggctgatgaatggcaatccaattaacacc
tccgtgccccacccgagccgtcagatgatgggcgacaccatcatcttccgctcggtgcag
gtgggaagcagcgccgtctaccagtgcaacgcctccaaccagcacggctacctgctggcc
aacgctttcgtcagcatcctcgacatggctccgaggatgctgggccctaaaaaccagctg
attaaagtcattgagaacaacagaaccttcctggactgtcccttcttcggttcccctctg
ccagagttacgctggtttaagaatggacagggcagcggcctggatgggggtcagtatcgt
gtttacatcaacggctctctggagatcaaacgggcccgagcagaggacgaaggcacttac
acctgtgtggccaacagcatcatgggcacggccgagaaccaggtccgcctggaggtcaaa
gaaccgactcgtataatccgagtccccgagcaccagtcagccatcagaggctccgtggct
cgcttcgaatgtaaggtgaagtctgaccccagcctccccatcgctgtggcctggtggaag
gatgacaagcctctctatctgggatggaggatcaagaaggacgaggagtcgctgaccatc
cccaacatcaacgagggcgatgagggaacgtacacctgcactgttaaatctgagatagac
gaggactctgcctcagcccgcctcactgtgttagaggaagcctccctcaacccctcagtc
tctagtgcctttcctccagaccgtccagaccctcccatggatctggatctgtcagaccca
gcagcccgcagcgttcgcctcacctggattcctggaaatgaccacaggagccccatcaca
gagttcttggtccagtttgaagaggaccgctgggagccaggcagatggcagaacctgtcc
tcttaccctggggacctcaactctgtcatcctgcagctcgctcccttcatcaactatcag
ttcagggtcatcgccatcaacgcagtgggccagagtcagcccagccgaccctcaccacga
taccagaccagtggagctgccccagataccattcccagaggtctacgaggatggggctcc
aagaaggacaacatggagatcacctgggagcccctgattgacctggagagaaatggcccc
aacctgcactatagtgtgtggtggaaacggaaggattcaggggaggagtggagtaacgtg
accacaatggagtccaaacatgtcgtccaaaacacagacacctatgtgccttatgagctc
aaaatccaggccaggaatgagtttggatcagggcctgagtctaatatggtcactggatac
tccggagaggacaaacccaccgcccctcccactgacctgcgggtgtcaaaggtagacgac
atcaaagccaatatccactggaagcctgtggacatgaacactgtccagggagagttcaag
gagtacagactgtactactggcgcgagtccagtctggttccaggtctggtgttcagtaag
gaaaacaagaccaaaggtttctacagcaccatggccgagccgtccggcatcgtaactgac
ctggtaccctactcgcggtacaagatgctcatggttgtggccaacaacggctacgagggt
ccgcccagcaacatggtggattttgccaccaaggagggagtgccggatgctcccagggtc
ttcaggattaatcggaggacttttgatatgatccacctagaatgggaaaaacctctggag
cccaatggcattctgattggataccagctcaagtaccatacagtcaatggctccaggtcg
ggtcgtccccagctgcagactttccttccaaacgtgacagatttcaggctccgcctgccg
gaccgatctacccgctacaagttctctctgtcagcactcacccaagtgggagctggggag
gtctttgcagaggaatctccacatttcaccaacgaagagaactttactgatgctacaggt
ctagtcgagcttaccgacgcctctgtggcttcagctctcacacctactcctcctcctatc
gctcctccttctcctactaccatcgctcctacaaccattagtacctcaactactaccact
cctacaacaacgactcctaccactactacaactacaactaccactaccactacaaccgag
gcgaccactaccactaccacacctgctgtggtggtcaccttcaaacgtatcgatgagaat
atgccgggtacatgcttggcctctgggctggagatctggaatctgacggtggagcctaac
agtaactacgctaacgtcagctggaaacacaacttcccggccggcagcagcgagtttgtg
ctagagttcacactggacagcaacaactcggtgaaaattgtaccggtgaaacaacagccc
cccattacagtggcggatctgatcgcaggcgccaagtaccatctgagggtttactcccat
gagcacaacaacatcagaagcgaccctgtcacctttaagaccaaaacagcctacatagac
caggtagacatagccactcaaggctggttcatcgggctgatgtgtgccatcgctctcatc
atactgatccttcttatcgtctgcttcatcaagaggagtcgcggcggcaaatatccagtc
cgtgataaaaaagatctcccattggacccagtggatcagaaagaccaggatgggtccatt
gattaccacagcgacgaggacaacaagcctctgcagggcagccagacatcgctggagggc
aacgtgaaggaaagcgacgacagcctggtggactacggcgaaggcggcgacggccagttc
aacgaggacggctctttcatcggccagtacacggtgaagaaggacaaggacgagacggag
ggcaacgagagctctgaggccacctcgcctgtcaacgccatttactccctggcgtag
DBGET
integrated database retrieval system
