Scomber scombrus (Atlantic mackerel): 133977939
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Entry
133977939 CDS
T10651
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133977939 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssco03021
]
133977939 (smarcd1)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133977939 (smarcd1)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133977939 (smarcd1)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133977939 (smarcd1)
PBAF complex
133977939 (smarcd1)
GBAF(ncBAF) complex
133977939 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
133977939
NCBI-ProteinID:
XP_062272223
LinkDB
All DBs
Position
3:24675562..24693333
Genome browser
AA seq
514 aa
AA seq
DB search
MAARGGFQSAPTGGGVGAMGPGPPVPGAGPGMGPGTPSGRMGPSSAAQNHMYRSPMPGPG
YPRPGMPPSSRMTPQGPAMGPPGYGNSPVSRPGMPGVMDPSRKRPAPQQIQQVQQQNRNQ
HTKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRK
LRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLV
IELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRL
ARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRL
HALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLD
NKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVANPEEERRAEF
YYQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagaggggggtttcagtcagcaccaactggaggtggtgtcggagcaatggga
cctggacctccggtaccgggtgcaggaccgggcatgggacctgggactccctctggaagg
atgggaccgtcttcggcggcgcagaaccatatgtaccgctccccgatgcccgggcccggt
tacccgagaccgggcatgcctccatccagccgtatgaccccgcagggaccggccatggga
cccccaggatatggtaatagccctgtgtctcgccccgggatgcctggcgtgatggacccg
tctcgcaagaggcccgcaccccaacagattcagcaggttcagcagcagaaccgcaaccag
cacacaaagaagaagaagatggctgataaaattctacctcagaggatcagggaactggtc
ccagagtctcaggcttacatggatctactggcttttgagaggaagctggaccagaccatc
atgcgcaagaggttggacattcaggaggctcttaagaggcccattaagcaaaagagaaag
ctccggatcttcatatccaacaccttcaaccctgcaaagcctgacgccgaggacggagag
ggcacagtggcatcgtgggagctgcgtgttgaggggcgtctgcttgaagatacggccgtg
tccaagtatgaagccactaaacagaagaggaagttctcctctttcttcaagtccctggtg
attgagttggacaaggacctgtacggtccagataatcaccttgtggaatggcataggacc
gccaccacccaggagactgatggtttccaggtgaagaggccaggtgacgtgggtgtccgc
tgcaccgtcctgctcatgctggactaccagccccctcagttcaagctggacccccggctg
gctcgtatgctgggcatccacacccagacaagacctgtcatcatccaggctctgtggcag
tacgtcaagactcacaagctccaagacccccatgagcgcgagttcatcaactgtgacaaa
tacctgcagcagatctttgagacccagcgaatgaagttctctgagatcccgcagcgcctg
catgcactcctaatgcctccagagcccatcatcatcaaccatgtgatcagcgtggatcct
aatgaccaaaagaagactgcttgctatgacattgacgtggaggtggacgacacactgaag
acccagatgaactccttcctgctctccacagccagtcagcaggaaatagccgggctagac
aacaagatccatgaaaccattgagaccattaaccagctgaagacccagagagagtttatg
ctgagttttgccagagatcctcagggctttatcaatgactggctgcagtcccagtgcaga
gacctcaagaccatgacagatgtggttgcaaacccagaagaagagcgaagagccgagttc
tactaccagccgtgggcccaggaagcagtctgtcgctacttctactccaaggtccagcag
agacgacaggagctggagcaggcgctcggcatcaggaacacctaa
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