Scomber scombrus (Atlantic mackerel): 133978016
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Entry
133978016 CDS
T10651
Name
(RefSeq) DDB1- and CUL4-associated factor 1-like isoform X1
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ssco01001
]
133978016
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
133978016
Enzymes [BR:
ssco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
133978016
Protein kinases [BR:
ssco01001
]
Serine/threonine kinases: Other
Other
133978016
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
133978016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_WDR3_2nd
WD40
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
LisH
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
133978016
NCBI-ProteinID:
XP_062272321
LinkDB
All DBs
Position
3:complement(33547894..33578839)
Genome browser
AA seq
1593 aa
AA seq
DB search
MNFSEEVVSAALSAAVSAAMAVAMAVDAKAELAKLLDEWEETQQGTTEALVSILTKISEL
IERETGEYHKADPDPFDDRHPGRADPDCMLGQILKMLFRNDDFTNALLDTYIMTSRELNL
NTAACRLLQNIMPGLETGVVFQEKEGLIEKLFTWAREAERPLCVYATGLLARAMSNQEVA
ASYREENALLVPIMIQRLLELQSEGSQSQSGPTETPQNLPQDSQVEGTRTSTTSTDQQEK
TEEDVEEEEEEGRREKAGESSRKASKSSFKPSSLLGSVQKNGCSSSSGGGSARLIPDFVY
QASPDIGGGGGGGKRKAVKENGRKAKQKLNFTSSSCRTEDEEEDEEEEVQKSEVTSQQAN
STSWSEMSSMVIGSDYRLLPLSPAMEQRLILQYLTPLGDYQELLAVFMQLDTRVLLMSYI
DLRRTKDVQLIFDALLYLASLLLHKKFAAEFIAHGGVQKLLEIPRPSMAATGVSLCLYYL
AYNQDAMERVCTLPDGVLSDMVSYALWLLESSHASGVCHATMFFSISFSFRAVLQLFDHQ
DGLRRLINLVSTLEILNTDNEVSIMSDDQVFSSRQTAKHTCMALRRYFEAHLSVKAEQVK
QSLQSDGGSIVTQQPFYKACSYTREQVVEVMEFLIECGPQLHWEPVEVFCKLSCVHLMLQ
LISAACDWRTYYGRSDTVRYALDILAILTVVPKVQLVLADTVEVIDETRSSVSTVGMSII
FGVAEGEVFVNDAEIQKSALQVIINCVCAPDQSLNTVGAFAVTPIRPSLHPQQPPAPHNR
VLAHMWQVVQNNNGIKVLLSLLSVKMPITDADLIRSLACKALVGLSRSTAIRQIISKLPL
FSSGHIQQLMKEPVLQDKRSEHIRFCRYAAELTERVSGKPLLIGSDVSLARLQRANVVAQ
SRITFAEKELLMLIRNHLVAKGLNDTANTLIKEANLSVACQNSSSCITPSSSSVIPRTCR
IAGGIAARIGSHHGSSPVSSITAVTPSTSRSPVLPHPSPLSSTSALALPGPHPVPHGQNS
PLVGRILFSRERSLTCGSTGKRLRALKQKSDHGAFIQTPAMKKQLERHLPSPPTLDSIIT
EYLREQHARCPNPVTTCPPFSLFTPHRCPEPKQRRQASPNFTARLGSRVLYPKYEGVDRG
CLDRHLIFSRFRPMSVFHEADGDESGFTCCAFSARERFLMLGTCSGHLKLYNVFSGEETA
NYACHTSAITHLEPSRDGKLLLTSASWSVPLSALWTMDSVFGMKNSFVDDHYVEFSKLSQ
DRVIGTKDQIAHIYDIQTGQKTLTLNDPGLANNYKRNCATFNPTDDLVMNDGVLWDVRAS
RAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTFHLLRTVPALDQCRLVFNSNATIMY
GAMLQADDEDDAMDRQMKSPFGSSFRTFDATDYKPIATVDVKRNIFDLCTDTKDCYLAVI
ENQDTVSLDTVCRLYEVGRHKLVEEGDDDDQDDEDQDDDDSSDSDDDDDDDDDMDTDPLI
EALANNDDDDDDDGEDGGRANSPTDQEIADLLGSNSDEGNDEEADNDDDSEDSDFDDDDD
DDESDIIDFPAQSDDEEDDDVELIRTLCDRWFS
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atgaacttctccgaagaagtcgtgtctgccgcgctgtcggccgccgtgtcggcagcgatg
gccgtcgccatggcggtggacgccaaggctgaactcgccaagctgctggacgaatgggag
gaaacgcagcagggaaccacggaggctctggtctccatcctcaccaaaatatcggagctg
attgaacgggagacgggagagtatcacaaagcagaccccgacccctttgatgatcgtcat
ccaggacgagcggatccagactgcatgctgggacagatcctgaagatgctctttaggaac
gacgactttacaaacgcgctgttggacacgtatataatgaccagcagagagctgaacctc
aacacagccgcctgtcgtctgctgcagaacatcatgccgggtctggagacgggcgtcgtc
ttccaagagaaggaaggtctgattgagaagttgttcacctgggctcgtgaagcggagcgg
ccgctgtgcgtctacgctacgggtctgctggccagagccatgagcaaccaggaagtggcg
gcgagctaccgagaggagaacgctctgctggttcccatcatgattcagcgactcttagag
ctgcagtctgaagggtctcagagtcagtcagggcccacagaaaccccccagaatctacct
caggactctcaggttgaaggcacgcggacttcaaccacctcgacggaccagcaggagaag
acggaggaagacgtggaggaagaggaggaggaaggaaggagagagaaagccggagagagc
agcaggaaggcgtcaaagtccagcttcaaaccttcgtctctgctcgggtcggtgcagaaa
aacggctgcagcagcagcagcggcggcggctccgcccgactgatcccggacttcgtttac
caggcgagcccggacatcggaggaggaggaggaggagggaagaggaaggcggtgaaggag
aatgggaggaaggcgaagcagaagctcaacttcacctcctcctcctgcaggactgaggat
gaggaggaggatgaggaggaggaggtgcagaagagcgaagtcacctcccagcaggccaac
agcacctcctggtccgagatgagctccatggtgatcggctccgactaccggctgctcccg
ctgagcccggccatggagcagaggctcatcctgcagtacctgaccccgctgggagactac
caggagctgctggccgtcttcatgcagctggacactcgggtgctgctgatgagctacatc
gacctccggcggaccaaagacgtccagctcatcttcgacgccctcttgtatctcgcctcg
ctgctcctccataagaagtttgcagcggagttcatcgctcacggaggagttcagaaactc
ctcgagatcccgagaccttcgatggcggcgaccggagtttcactctgcctgtactacctg
gcttataaccaagacgctatggagagggtgtgcacgctcccagacggcgtgctgtcagac
atggtgtcctacgctctgtggctgctggagtcgtcccacgcgtcgggcgtctgccacgcc
accatgttcttctccatctccttctccttcagagccgtgctgcagctgtttgaccaccag
gacggcctgcgcagactcatcaacctggtcagtacgttagagattcttaacacggataac
gaagtgtccataatgagcgatgaccaggtgttctccagccggcagacggccaaacacacc
tgcatggccctgcgcaggtattttgaggctcacctgtcagtgaaggctgagcaggtcaaa
cagtcactgcagtcagacggaggaagcatcgttacccagcaaccgttctacaaggcatgc
tcgtacaccagagagcaggtggtggaggtgatggagttcctcatcgagtgcggaccgcag
ctccactgggaacccgtggaggttttctgcaagttgtcctgcgttcatctaatgctgcag
ctcatctctgccgcctgtgactggaggacgtactacggcaggagtgacacggtgcgttat
gcgttggacatcctcgccatcctgacggtggttcctaaggtccagctggtgctcgccgac
accgtggaagttattgatgaaaccaggtcgtctgtttccaccgtgggtatgagcatcatc
ttcggtgttgcagagggagaagtgttcgtcaatgatgctgagatccagaagtctgcacta
caagtgataataaactgtgtgtgtgctccagaccagagcctgaacactgtgggagctttc
gccgtgacccccatcaggccgtcgctgcacccccagcagccccccgccccccacaacagg
gtgctagcccacatgtggcaggtggtgcagaacaacaatggaataaaggtgctcctgtcg
ctgctctcggtgaagatgcccatcacagacgcagacctgatccggtctctggcctgtaaa
gctctggtcggactgtctcgcagcacagcgatcagacagatcatcagcaagctgccgctc
ttcagcagcggacacattcaacagctgatgaaggagccggtgctgcaggacaaacgaagc
gagcacatccgtttctgccgatacgcggcggagctgaccgagcgagtttcgggcaagcct
ctcctcatcggtagcgacgtctcattggctcgcctgcagagggccaatgtggtcgcccaa
tcgcggatcacctttgccgagaaggaactcctcatgctgatcaggaaccacctggtggcc
aaagggctcaacgacacggccaacacgctcatcaaagaggccaatttatccgtcgcctgt
cagaactcttcctcctgtatcaccccttcctcttcctcagtgattcccaggacctgtcgg
atagccggcgggatcgcagctcggatcggcagccatcacggatcctctccggtgtcctcg
attaccgcggtcaccccgtctacctctcgctccccggtccttcctcacccgtcgcccctg
tcctctacgtcagccctcgccctacccggtcctcacccagtacctcacggtcagaactcc
cctctggtcggccggattttgttctcacgggaacgatcgttgacctgtggcagcaccggg
aaaagactgcgagcgttgaaacagaaatctgatcacggtgctttcatccagactccagcc
atgaagaagcagctggagcgccaccttccttcccccccgaccctcgacagcatcatcacc
gagtacctgagggaacagcacgcccgctgccccaaccccgtcaccacctgcccgcccttc
tcgctcttcaccccccaccgctgccccgagcccaagcagaggaggcaggcgtcgcccaac
ttcacggcccggctggggagccgagtgctttacccgaaatacgaaggcgtggaccgaggc
tgcctggacagacatctgatattcagcaggtttcggccgatgtcggtattccacgaggcc
gacggagacgagagcggtttcacctgttgtgccttctcagcccgcgagcgtttcctgatg
ttgggaacgtgctcgggtcacctcaaactctacaacgtcttctccggagaggagacggcc
aactacgcctgccacacatcagccatcacacacctcgaaccctccagagacgggaagctg
ctgctgacgtcggcttcttggagcgtcccgctgtcagctctctggacgatggacagcgtc
ttcggcatgaagaactcatttgtagacgaccactacgtcgaattcagtaaactctctcag
gacagagttatcggcaccaaggaccaaatcgcccacatctacgacatccagacgggccag
aagactctgaccctgaacgatcccggcctcgccaacaactacaagaggaactgcgccacc
ttcaaccccacggacgacctggtgatgaacgacggcgtgctgtgggacgttcgggcgtcg
cgggccattcacaagttcgacaagttcaacatgaacatcagcggcgtttttcatcccaac
ggcctcgaggtcatcatcaacacggagatctgggacctgaggacgttccacctgctgcgc
accgtcccagcgctggaccagtgcagactggtcttcaacagcaacgctaccatcatgtat
ggagcaatgctgcaggctgatgatgaagatgacgcgatggatcggcagatgaagagtccg
ttcggttcttccttcagaacgttcgacgccacagactacaagccgattgccaccgtggac
gtaaagaggaacatcttcgacctgtgtacggacaccaaagactgctacctggctgtcatc
gagaatcaggacacagtgagtctggacacggtgtgccgactgtacgaggtcggccgacac
aagctagtagaagaaggagacgatgatgatcaggacgatgaagaccaggatgatgatgat
tcctccgactcggacgatgacgacgacgatgacgatgatatggacacggacccgctcatc
gaggcactggccaataacgacgacgatgatgatgatgatggagaggacggaggcagagcg
aactctcccacagatcaagagatcgcggatcttctcggcagcaacagcgatgaaggaaac
gatgaagaggccgacaacgatgacgactccgaagactccgattttgacgatgatgacgac
gacgatgaatccgacatcatcgacttcccagcacaatcagacgatgaggaggacgacgac
gtggagctaatccgaaccctctgtgaccgatggttctcctga
DBGET
integrated database retrieval system
