Scomber scombrus (Atlantic mackerel): 133978021
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Entry
133978021 CDS
T10651
Symbol
gdf5
Name
(RefSeq) growth/differentiation factor 5
KO
K04664
growth differentiation factor 5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04060
Cytokine-cytokine receptor interaction
ssco04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
133978021 (gdf5)
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
133978021 (gdf5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
ssco04052
]
133978021 (gdf5)
Cytokines and neuropeptides [BR:
ssco04052
]
Cytokines
Transforming growth factors (RSTK binding)
133978021 (gdf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TGF_beta
TGFb_propeptide
Motif
Other DBs
NCBI-GeneID:
133978021
NCBI-ProteinID:
XP_062272330
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Position
3:complement(34197047..34211247)
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AA seq
586 aa
AA seq
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MKVVKRCCLLLSCWTLIYLHPVLGSLSRTRPTEQHLHRLGEAAERGGGEQAHRRTGGGLG
GSTLAAGGKPVTASGTWKSSPVSPARITRIRAGPPLIKGETTIKSKLSASASSSPGSHRT
VPGGHRAQLQHRDRGAGLGRSWSPGGHAAAFSAHAAVKGVGVAAGGGGGGPAGKTLGKVV
SRAGAAAPARPGPQRAAPAAQRGADTRSPKLSDPQHKEPLVIPHDYMLSLYWSLSTGDLN
SSALHAAGLANTITSFVDKGQDDRGPQLRRQRYHFNISSLERDGLLGAELRILRKRLSDP
RKASMAALGSTAADGGGGGGGGGASPCLKLYTCASAKQKSALLQIRNVEDLSGGFSSKWE
VFDISKVFKGFKNQQIQQLCFELEALEHRGGRPTDLRSLGFARPGRTNKEKAFFLAFGKS
KKRDLFYNEIKARSGHDNKTVYEYLFTQRRMRRAPAARGANKKPLQQPHTLPQHQAAKTQ
TRPRCHRRRLHVNFKEMGWDDWIIAPLEYESFHCDGVCDFPIRSHLEPTNHAIIQTLMNS
MDPESTPPTCCVPTRLSPISILYIDSANNVVYKQYEDMVVESCGCR
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttgtgaagcgttgttgtcttctgctgagctgctggactctcatttacctgcat
cccgtcctcggttcactcagccggaccagaccgaccgagcagcacctccaccggctcgga
gaggcagcggagcgcgggggaggagagcaggctcaccggagaaccggaggggggctcggt
gggtccacattagcagcaggcggtaaaccagtcacagcttctgggacctggaaatcatca
ccggtgagcccggcgaggatcacgcggatccgcgcgggtccaccgttaattaagggcgag
acaaccattaaaagcaaactgtctgcgtccgcatcctcatcaccgggcagccaccggacc
gtgccgggcggacaccgggctcagctgcagcaccgggacagaggggcagggttggggcgc
tcctggtcacccggcgggcacgctgctgctttcagcgcacatgcagcagtgaaaggagtc
ggggttgcggctggtggaggtggaggaggaccagcggggaaaactttggggaaggttgtt
tccagagcgggtgcagcagctccagcgcgccccgggcctcagagagcggctccggcggcg
cagcggggggccgacaccaggagccccaaactgagcgacccgcagcacaaagagccgctg
gtgattcctcacgactacatgctgtctctgtactggtctctgtccaccggggacctgaac
agcagcgctctgcatgcagcgggtctggccaacaccatcaccagcttcgtggataaaggg
caagatgatcgcgggccccaactgagacggcagcggtatcacttcaacatcagctccctg
gaacgagacgggctcctgggggccgagctacgcatcctgaggaaacgtctgtctgacccc
cgcaaagcctcgatggcagcgctgggatccacagccgccgatggaggaggaggaggagga
ggaggaggcgcgtccccctgcctgaagctgtacacctgcgcctcagctaaacaaaagtct
gctctgctccagatcaggaacgtggaggatctgagcggcgggttcagcagcaaatgggaa
gtgttcgacatatcaaaagtcttcaagggtttcaagaaccagcagatccagcagctgtgc
tttgagctggaagccctggagcaccggggcggtcggcccacggatctgcgctctctgggg
ttcgcccgaccgggaaggaccaacaaggaaaaggccttcttcttggcgttcggcaaaagc
aagaaacgcgaccttttctacaacgagatcaaagcgcggtcgggccacgacaacaaaacc
gtctacgagtatctgttcacgcagcggaggatgcgccgagctcccgcggcgaggggcgcc
aacaagaagccgctgcagcagccgcacacgctcccgcagcaccaggcggccaagacgcag
acgagaccgcgttgccaccggagacgcctgcacgtcaacttcaaagagatgggctgggac
gactggatcatcgcgccgctggagtacgagtccttccactgcgacggcgtctgcgacttc
cccatccgctcgcacctggagcccaccaaccacgccatcatacagacgctgatgaactcc
atggacccggagtcgacgccgcccacctgctgcgtccccacgagactcagccccatcagc
atcctctacatcgactcggccaacaacgtcgtgtacaagcagtatgaggacatggtggtg
gagtcgtgtggctgcaggtag
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