Scomber scombrus (Atlantic mackerel): 133978082
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Entry
133978082 CDS
T10651
Symbol
pparg
Name
(RefSeq) peroxisome proliferator-activated receptor gamma isoform X1
KO
K08530
peroxisome proliferator-activated receptor gamma
Organism
ssco
Scomber scombrus (Atlantic mackerel)
Pathway
ssco03320
PPAR signaling pathway
ssco04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133978082 (pparg)
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
133978082 (pparg)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133978082 (pparg)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ssco03310
]
133978082 (pparg)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
133978082 (pparg)
Nuclear receptors [BR:
ssco03310
]
1. Thyroid hormone like
1C. Peroxisome proliferator-activated receptor (PPAR)
133978082 (pparg)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
PPARgamma_N
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
133978082
NCBI-ProteinID:
XP_062272411
LinkDB
All DBs
Position
3:complement(21251146..21284029)
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AA seq
554 aa
AA seq
DB search
MQTSGREFNHQSGHSFSADMVDTQQLLAWPVSFSLSAVDLSSELDDSSHSLDMKHLSTLD
YASISSSSSVPSSMSPSLVSSISAGVAYDPSPPQSEDHLTNMDYTSMHSYRAELDTHNSI
KLEPESPPQYSDSPVFSKLQDDTSTASSLNIECRVCGDKASGFHYGVHACEGCKGFFRRT
IRLKLVYDHCDLHCRIHKKSRNKCQYCRFQKCLNVGMSHNAIRFGRMPQAEKEKLLAEFS
SDMEHMHPEAADLRALARHLYEAYLKYFPLTKAKARAILSGKTGDNAPFVIHDMKSLMEG
EQFINCRQIPIQEHQQHTSALTHGYAGITGAHPSLEYGTVEMSGISGQGPTDAVELRFFQ
SCQSRSAEAVREVTEFAKSIPGFVNLDLNDQVTLLKYGVIEVLIIMMSPLMNKDGTLISY
GQIFMTREFLKSLRKPFCQMMEPKFEFSVKFNTLELDDSDMALFLAVIILSGDRPGLLNV
KPIEQLQETVLHSLELQLKLNHPDSLQLFAKLLQKMTDLRQIVTDHVHLIQLLKKTEVDM
CLHPLLQEIIKDLY
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacatcaggcagagagtttaaccatcaaagtggtcatagcttctcagcagacatg
gtggacacccagcagctcctagcctggcctgtcagtttcagtctgagcgccgtggatctg
tcatctgagttggacgacagctcccactccctcgacatgaagcatttgtccacattagac
tacgcttccatctcttcctcctcttcagtcccttcctccatgtctccctcgctggtatcc
tccatctctgccggcgtggcctatgaccccagtccgccacaaagtgaagaccacctgacc
aacatggactacacaagcatgcacagctacagggcagagctagacacgcacaattcaatc
aagctggagccagagtcaccaccacagtactctgacagtcccgtgttctccaagcttcaa
gatgatacatcaacagcatcatcgctaaacattgagtgtcgtgtgtgtggagataaagcc
tctgggtttcattatggtgtccatgcctgtgagggctgtaagggtttcttcagacgcaca
atcaggttaaagttggtgtacgatcactgtgatcttcactgtcgcattcacaagaagtcg
cggaacaaatgccaatactgtcgctttcagaagtgcctcaatgttggcatgtcacacaac
gccattcgttttggccgaatgccccaggcggagaaggagaaactgctggctgagttctcg
tctgacatggagcacatgcacccggaggcagcagatctgagggctctggcacggcatctg
tacgaagcctatctgaaatacttccccctcaccaaggccaaggccagggccatcctctct
gggaagaccggagacaacgctccttttgtcatccatgacatgaagtctctaatggaaggg
gagcagttcattaattgcaggcagatacccatccaggagcaccagcagcacacctccgcc
cttacacatggttacgcagggatcacaggagcccacccaagtttggagtatggcactgtg
gaaatgtcaggtatcagcggtcaggggccaacagatgctgtggagctgcgtttctttcaa
agctgtcagtcacgctccgccgaagctgtgagagaagtgacagagtttgccaagagcatc
cccggattcgtcaatctggatctcaatgatcaggtaactttgctgaagtacggtgtgatc
gaggtcttaatcatcatgatgtcgcctctgatgaacaaagacgggaccctgatctcctac
ggacagatcttcatgacgcgggagttcctcaagagtctcaggaaacccttctgccaaatg
atggaacctaagtttgaattctccgtcaagttcaacactctggagttagacgacagcgac
atggcgctgtttctggctgtcattatcctcagtggggaccgtccaggccttctgaacgtg
aagcccattgagcagcttcaggagacggtgctccattcgttggagctgcagctgaagctc
aatcacccagactctctgcaactgtttgccaagctgctccagaaaatgaccgacctgcga
cagatcgtcaccgaccacgtccacctcatccagctgctgaagaaaactgaggtggacatg
tgcttacacccactgctgcaggagatcatcaaagacttgtattag
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