Scomber scombrus (Atlantic mackerel): 133978399
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Entry
133978399 CDS
T10651
Symbol
trpm5
Name
(RefSeq) transient receptor potential cation channel subfamily M member 5
KO
K04980
transient receptor potential cation channel subfamily M member 5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
133978399 (trpm5)
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
133978399 (trpm5)
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Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
LSDAT_prok
Ion_trans
SesA
DUF7695
Motif
Other DBs
NCBI-GeneID:
133978399
NCBI-ProteinID:
XP_062272638
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Position
1:31043786..31061517
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AA seq
1234 aa
AA seq
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MQDRQGTPLGTLRQQTRCLRCGDVLEWSEEHSVLLGCSCCSTVDETIQNVARGLASRIKK
EKSHWAAGRVGDIDFVGSTKTRGKFVRVQGNTDPVMIYQMLTEEWGLSPPHLVVALVGGD
ELSQMKPWLRDILRKGLVKAAQSTGAWILTNGLRFGITKHLGQAVRDHSLASTSSKVRVV
AIGVAPWNMIHNREALLSAKVDEPAVYKPQDLPHGSVYSLDSHHSHFVLVEEDPNRPGAT
SEMRVKLLNHISLQRTGYGGSGSFEIPVLCLLVHGEPRILKRMYKGIGNSTPWLILAGSG
GVADILVTLMNRGCWDMDSVHELLLDTFPNAHHSTDISNWVKLIQKILDHRHLLTVHDPE
QESSELDTVILKALVKACKSQSQEAQDFLDELKLAVAWNRVDIAKSDIFNGDVEWKACDL
EEVMMDALINDKPDFVRLFVDNGVNLGEFLTYGRLQELYWSVSEKSLLHNLLLKKYEEKQ
LLLGAARTPGPPGHHPPEQGDRKPRFTLYEVAKVLKDFLHDSCKGFYQKVPTEKPSKGRL
FHSQKNLAELEERCEHPWRDLFLWAVLQNRQQMANYFWAMGPEAVAAALAGCKILKEMAR
LESEAESARSMKEAKYEQFALDVFGECYSNSEDRAYALLVRRTHCWSKSTVLNLATEADA
KSFFAHDGVQALLTKIWWGAMRTDTAISKLVVSFFCPPLIWTNLIKFSDEELDNRNGREQ
FVELDSMDTENALLLRDDDDPLDSPAGGPAAQSCASVWWRFLLRRWRRFWSAAVTVFLGN
VIMYFAFLCLFTYVLLLDFRPPPPLGPGAPEIMLYFWVFTLVLEEIRQSFFTDEEMNILK
KFKLYVEDNWNKCDMVAISLFVVGVSCRMVENTYEAGRTVLAIDFMVFTLRLIHIFAIHK
QLGPKIIIVERMMKDVFFFLFFLSVWLIAYGVATQALLHPNDPRIDWVFRRALYRPYLHI
FGQIPLEEIDAARMPEINCTNDKDEIIMGLRPPCPNVYANWLVILLLVIFLLVTNVLLLN
LLIAMFSYTFQVVQGNTDIFWKFQRYNLIVEYHSRPALAPPFIIISHLSQLLLSLIKRPE
PKQEHLERELPAGLDQRLITWETVQKENYLAKLERQHWESSEERLKSTSSKVQSLLRIVG
GFRDQEKRLAVMEAQIRYCGEVLSWMAECFAQSTLKCGKEAPRAPMSLTGYNPSSPSSDT
PQSQPEKEAKQGGAEARPGHPGYGANKKFPYIDE
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacagacagggcacacctctggggacactgcggcagcagacacgatgcctacga
tgcggggatgtactggagtggtcagaggagcacagtgtcctcctgggctgttcgtgctgc
tccacagtggacgagacaatacagaatgtagccaggggtctggccagcagaatcaaaaag
gagaagagtcactgggcagctggaagagtgggcgacattgactttgttggctctactaag
acaaggggaaagtttgtgagggtgcaagggaacacggacccggtgatgatctaccagatg
ctgacagaagagtggggtctttctcctccgcacctggtggtggcactggtgggaggagat
gagctatctcagatgaagccctggcttagggatattctcagaaaaggactggtgaaggct
gcacagagcacaggggcatggattttaactaatggccttcgctttggcatcaccaaacac
ttgggccaggcggtgcgagatcactccttggccagcacctcctctaaagttcgtgtagtg
gcaattggcgtcgcaccctggaacatgatccacaaccgagaggcactactctccgccaag
gtggatgagccagctgtttacaagccacaggacttgccccatgggtcagtgtattccctg
gatagccaccactctcactttgtgctggtggaggaggatccaaacagaccaggagccacc
agtgaaatgagggtgaagctactaaatcacatctctcttcaacgcactggttatggaggt
tcgggaagttttgagatccctgtcctatgtctgttggtccacggggaaccaaggatccta
aagcggatgtataaaggcattggcaattcgacaccatggctgattctggcaggctcagga
ggcgtggctgacatcctcgtcacgctgatgaataggggctgctgggatatggacagtgtt
catgagctgctgctggacacctttccaaatgcccaccacagcacagacatcagtaactgg
gtcaagctgatccagaagatactggatcacaggcacctccttactgtccatgaccctgag
caggagagctctgagctggacacggtcatcctcaaagctctagtgaaggcttgtaagagc
cagagtcaggaagcccaagacttccttgatgaactcaagctggctgtggcctggaacaga
gtggacattgccaagagtgacatctttaatggtgacgtggagtggaaggcatgtgatctt
gaagaggtgatgatggatgccttgatcaatgacaagcccgactttgtgcgcctctttgtg
gacaacggtgtgaacctgggtgagttccttacctacggtcgtctacaggagctctattgg
tctgtgtcggagaagagccttctccataacctactcctcaaaaagtacgaggagaagcag
cttctgctcggtgctgccaggacacccggccctcctggacaccatccacctgaacagggg
gaccggaaaccccgcttcaccctgtatgaggttgccaaagtgctgaaagactttctccat
gactcctgcaaaggcttttaccaaaaggttcccacagagaagccttcgaagggtcgactg
ttccacagccagaagaacctggctgaattagaggaacgctgcgaacatccttggagggat
cttttcctctgggccgtccttcagaaccggcagcagatggctaactacttttgggccatg
ggccctgaggctgttgcggcagcgctggcgggttgtaagatactgaaagagatggcacga
ctggaatctgaggctgagtctgcacgtagcatgaaggaggccaagtatgagcagtttgcc
cttgatgtcttcggggagtgttactccaacagtgaagacagagcttatgctttgttagtg
aggagaacacactgctggagcaaatcaacagttcttaacctggcaactgaggcagatgcc
aaatccttctttgcccacgatggagttcaggctctcctcacaaaaatttggtggggggcg
atgagaacagacacagccatctccaagcttgtggtgtctttcttctgtccgcctctcatc
tggaccaacctcataaagttcagcgacgaggagctggataatcgtaacggtcgagagcag
tttgtggagctcgacagtatggatacagaaaatgctctactcctaagagatgatgatgat
cctttggactctccagctggaggcccagcagctcagagctgtgcctcagtgtggtggcgt
ttcttgcttcgccgctggcgtcgcttctggagcgctgctgtcaccgtgttccttggtaat
gtcatcatgtactttgccttcctctgcctcttcacctacgtgctcctgctggacttccgc
ccaccaccaccccttggccctggagctccagagataatgctctacttctgggtcttcacc
ttggtgctggaggaaattcgacagagcttcttcacggatgaagagatgaacatcttgaag
aagttcaaactttatgtggaagacaactggaacaagtgcgacatggttgccatctcactc
tttgttgttggagtatcgtgcaggatggttgaaaacacctatgaggcaggaaggacagtt
ctagcaattgacttcatggtattcactctacgtttgatccacatctttgccattcataag
cagctgggccccaagatcatcatcgtggagagaatgatgaaggatgtcttcttcttcctc
ttcttcctgagtgtgtggctcattgcgtacggcgtagctacccaggctcttcttcaccct
aacgacccaaggattgactgggtgtttcgcagagccttgtatcgcccttacctgcacatt
tttggccagatcccactggaggaaatagatgctgctcgtatgcctgaaattaactgcacc
aatgacaaagatgagattatcatgggcctacgaccgccatgtcccaacgtctatgccaac
tggctggtcatcctgcttcttgtaatcttccttcttgtcaccaatgtcctgctgctcaac
ctgctaattgccatgttcagctacaccttccaggtagtgcagggcaacacggacattttc
tggaagttccagagatacaacttgatcgtagagtaccacagtcgcccagcactggctcca
cccttcattatcatcagccacctctctcagctcctcctcagccttatcaaacggcctgag
cccaaacaggagcatcttgagagagagctgccagcaggactagaccagaggctgataaca
tgggagacagtacagaaagagaactacctggccaaactggagcgtcagcactgggagagc
agtgaggagagactcaagagtacctcctcaaaggtccagagcttgctgaggattgttggt
gggttcagggaccaagagaaacgactggcagtcatggaagctcagatcagatactgtgga
gaggtattgtcctggatggcggagtgctttgctcagagcacactgaagtgtgggaaagag
gctccgagagcaccaatgtctttgacaggctacaacccaagcagccccagcagtgacaca
cctcaaagtcaaccagagaaagaagccaaacaaggaggagcagaagccagaccaggtcac
ccgggatacggcgctaacaaaaaattcccttacattgatgaataa
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