Scomber scombrus (Atlantic mackerel): 133978458
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Entry
133978458 CDS
T10651
Symbol
cltcl1
Name
(RefSeq) clathrin heavy chain 1
KO
K04646
clathrin heavy chain
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04142
Lysosome
ssco04144
Endocytosis
ssco05100
Bacterial invasion of epithelial cells
Brite
Membrane trafficking [BR:
ssco04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
133978458 (cltcl1)
Exosome [BR:
ssco04147
]
Exosomal proteins
Proteins found in most exosomes
133978458 (cltcl1)
BRITE hierarchy
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133978458
NCBI-ProteinID:
XP_062272658
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Position
4:22923271..22955842
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AA seq
1705 aa
AA seq
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MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGEQNQVVIVDMTDPTN
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTEEVMFWKWISVNTVA
LVTDTAVYHWSMEGDSQPAKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVGA
MQLYSVERKVSQPIEGHAAAFGEFKVEGNAKPSTLFCFAVRSQAGGKLHIIEVGQPAAGN
QPFTKKAVDVFFPPEAQTDFPVAMQIGSKHGVIYLITKYGYIHLYDLESGVCIYMNRISA
ETIFVTSPHEATSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLALRMAVRSNLAGA
EELFGRKFNTLFAQGSYSEAAKVAASAPKGILRTAETIRKFQSVPAQPGQASPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKASDPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWVFLLRNVMRVSPDQGLQFAQMLVQDE
EPLANINQIVDVFMEGSLIQQCTSFLLDALKNNRPAEGHLQTRLLEMNLIHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
DDSLECLRAMLSANIRQNLQLCVQVASKYHEQLGTQALVELFESFKSYEGLFYFLGSIVN
FSQEPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLIMVVRGQF
STDELVEEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNTPERFLKENPFY
DSAVVGRYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWANVL
EENNPFRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINKLDNYDAPDIANIAISNELFEEAFAIFKKFDVNTS
AIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLQRDLVKEAIDSYIKAVDPSAYMEV
VNAASKNNNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFVSGPNNAHIQQ
VGDRCYEEGMYEAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCFAC
VDGEEFRLAQICGLHIVIHADELEDLISYYQDRGYYEELIALLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEYDNAVITMMS
HPTDAWKEGLFKDIIAKVANVELYYKSLTFYLELKPLLLNDLLTILSPRLDHSRAVNFFS
KVNQLKLLKPYLRSVQNHNNKSVNEALNNLLTEEEDYQGLRASIDAYDNFDTISLAQRLE
KHELIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDAMLYAAESKDAELAETLLQWFLEE
GRKECFAACLFASYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVDKLEEAESQR
KTEDEVTEPQPMVFGQQLMLTAAPAQVAPQPAYAGYGYPAAATAAPAGYPAAAAPAPAGY
PAAAAAAAAAAPAGYPAQPAYGFNM
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatactgccgatacgtttccaggaacatctgcagttgcagaacctgggggtg
aacccagccaacattgggttcagctatctgaccatggagtctgacaagttcatctgcatc
agagagaaagtgggcgagcagaatcaggtggtgattgtggacatgacggaccccaccaac
ccaatcaggagaccaatctctgccgacagtgccatcatgaaccctgctagcaaggtcatc
gccctgaaagctgccaagacgctgcagatcttcaacattgagatgaagagtaagatgaag
gctcacaccatgacagaggaggtcatgttctggaagtggatatcggtaaacacggtcgcc
ttggtgacagataccgctgtatatcactggagcatggagggggattcccaaccagccaaa
gtattcgatcggcacgccagtctagcaggatgtcagatcattaactacagaactgacgaa
caacagaagtggctactgctgattgggatttccgcacagcaaaaccgtgtggttggagcg
atgcagctgtattcggtcgagaggaaagtgtcccagcccatcgagggtcatgctgccgcc
tttggggagttcaaagtggagggaaatgccaaaccctccaccctcttctgctttgctgtg
cgctcacaggccggtggaaagctgcacatcattgaagttggtcagccagctgcaggaaac
caaccatttactaagaaagcagtggatgtgttcttccctccagaggcccagacagacttt
cctgtagctatgcagattggtagtaagcatggcgtaatatatctgatcacaaagtacggt
tacattcacctgtacgacctggagtctggagtgtgtatctacatgaaccgaatcagtgca
gagaccatctttgtcacttctcctcatgaagccacctcaggaattattggggttaacaag
aagggacaggttttgtcggtatgtgttgaagaggaaaacattgtcaactatgccaccaac
gtgctgcagaacccagatctggccttgaggatggctgtgaggtcaaaccttgctggcgct
gaggagctttttggcaggaagttcaacactctgtttgcccagggaagttattcagaagcc
gcaaaggttgctgcatcagcacccaagggtatcttgcggacagccgagaccattcgtaag
tttcagagtgtgccggctcaaccgggtcaggcatctccactgttgcagtactttggcatt
ctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcctgtcctg
cagcagggccgcaagcagctgctggagaaatggctgaaggaggacaagctggagtgctca
gaggagctgggagacctggtgaaggcgtctgaccctaccctcgctcttagtgtgtacctc
agagctaacgtccccaacaaggtcatccagtgcttcgctgagaccggccagttccagaag
atagtgctgtatgctaagaaggttggctacaccccagactgggtgtttttgttgaggaat
gtgatgcgagtcagccctgaccagggactgcagtttgcacagatgctggtccaggatgag
gagccgctggccaacatcaaccagattgtggatgtattcatggagggcagcctaatccag
cagtgtacctccttcctgttggatgctttaaagaacaaccgcccagctgaaggacactta
cagacacgcctgcttgagatgaacctcatacatgcaccccaggtagcagatgcgatcctg
ggcaaccagatgttcacacactatgaccgtgcccatgttgctcagctgtgtgagaaggca
ggtttgctgcagagagctcttgaacactacaccgacctgtatgatatcaaacgagccgtg
gtgcacacacatctgctcaaccccgagtggctggtgaacttctttggctctttgtctgtt
gacgactcgttggagtgtctaagagccatgctgtcagctaacatcagacagaacctgcag
ctttgtgtccaggtagcatctaagtatcacgagcagctggggactcaggcattagtggag
ctctttgaatctttcaagagttatgagggcttgttttacttcctcgggtcgattgtgaat
ttcagccaggagcctgatgttcacttcaagtacatccaggctgcctgtaaaaccggacag
atcaaagaagtagagagaatctgtagagagagcaactgttacgacccagagagggttaaa
aatttcctcaaggaggccaaactaacagaccagcttcctctcatcatcgtgtgtgatcgc
tttgactttgtccatgacctggtgctctacctctaccgcaacaatctacagaaatacatt
gaaatctatgtgcagaaagtgaacccaagtcgtttgccagtggtcataggcggtcttttg
gatgtagattgttctgaggatgtcattaagaacttgatcatggtggtccgagggcaattt
tccactgatgagcttgtggaggaggtagagaagaggaacaggttaaaacttctgttgcca
tggctggagtcccgtatccacgagggctgcgaggagccggccacccacaatgctctggcc
aagatctacatcgacagcaacaacacacctgagcgtttcctgaaggagaacccgttctac
gacagcgctgtggtcggacgctactgtgagaagagagatccccatctggcctgtgtggcc
tatgagagaggccagtgtgacctggatctcatcaaagtgtgcaatgagaactcattattc
aagagtgaggcccgatatttggtgcggcggaaagatccagaactttgggcgaatgtgttg
gaggaaaacaaccccttcaggagacaactcatcgaccaggtggtgcaaacagctctgtca
gagacccaggacccagaggaggtgtcagtcacagtcaaggccttcatgactgcagatctg
cccaatgagctgattgagctgctggagaagattgtacttgataactctgtcttcagtgaa
cacagaaaccttcagaacctgctgattttgacagccatcaaggcagaccgcactcgtgtg
atggagtacatcaacaagctagacaactatgacgctccagatattgctaatattgccatc
agtaatgagctctttgaagaggcttttgccattttcaagaagtttgatgtcaacacctca
gccatacaggtactgatagagcacatagggaacttagatcgagcctatgagtttgctgag
cgctgtaatgagcctgcggtgtggagccagttagccagagctcagctgcaaagggacctg
gtcaaagaggcgattgactcttacattaaagctgttgatccctcagcatacatggaggtg
gtcaacgcagccagcaagaacaataactgggaagatttggttaagttcctccagatggct
cgaaagaaggccagggagtcatacgtcgagacagagctgatctttgctttggctaaaaca
aaccgtctggctgagctggaagagtttgtcagtgggcccaacaatgctcacatacagcag
gtgggcgatagatgttatgaggaggggatgtatgaagcagccaaactcttatacaacaac
gtgtcaaactttgctcgacttgcatctacactagtccacctcggagagtaccaggccgct
gtggacagtgccaggaaagccaacagcacacggacatggaaagaggtgtgttttgcatgt
gtggacggtgaggagtttcggctggcacagatctgtggtctccacatagtgatccacgct
gacgagctggaggacctgatcagctactaccaggaccgcgggtactatgaggagctcatt
gctctgctggaggccgcactgggtttggagcgggctcacatgggcatgttcactgaactt
gccatcctctactccaagttcaaacctcagaagatgagagagcaccttgagctcttctgg
tccagagtcaacatcccaaaggtacttcgtgcggcagagcagtctcacttatgggcagag
ctggttttcctttatgataaatatgaggagtatgataatgctgtcatcacaatgatgtct
catccgacagatgcgtggaaagaagggctcttcaaagacattattgctaaggttgccaat
gtggagctgtactataaatctcttaccttttacttggagttaaagccgctcctactcaat
gacctgctgactatactgtctccacggctggatcacagccgagccgtcaactttttcagc
aaggtaaaccagctgaagttgctcaaaccctacctgaggtctgtccagaatcacaacaac
aagtccgtcaatgaagctctcaacaacctgctgacagaggaggaggactaccagggcctg
agagcatccattgatgcctacgacaactttgacaccattagtctggcacagaggttagag
aaacatgaactgattgagttcagacgcattgctgcttacctatacaagggcaacaaccgc
tggagacagagtgtagaactctgcaagaaggacaaactctacaaggatgccatgctgtat
gcagcagagtctaaagatgctgagttggcagagactttgctccagtggttcctggaggag
ggcaggaaggagtgctttgcggcctgcctgttcgcctcttatgacctgctgcaccctgat
gtggtgctggagctggcctggaggcacaacatcatggactttgccatgccatacttcatc
caggtcatgagagagtacctcaccaaggtggacaaactggaggaggctgaaagccaaagg
aaaactgaagacgaggtgacagagcctcagccgatggtgtttggccagcagctgatgttg
actgcggcccctgctcaagtggctccccagccggcgtacgcaggctacggctaccccgct
gctgccaccgctgcacctgcgggctacccggctgcggccgcccctgcacctgcgggctac
cccgctgctgctgctgctgctgctgctgccgcacctgcgggctacccagctcagcccgcc
tacggcttcaacatgtaa
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