Scomber scombrus (Atlantic mackerel): 133978722
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Entry
133978722 CDS
T10651
Symbol
clip1a
Name
(RefSeq) CAP-Gly domain-containing linker protein 1 isoform X1
KO
K10421
CAP-Gly domain-containing linker protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
133978722 (clip1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssco03036
]
133978722 (clip1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssco04812
]
133978722 (clip1a)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
133978722 (clip1a)
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
133978722 (clip1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
CLIP1_ZNF
Crescentin
ADIP
CC149
CENP-F_leu_zip
Motif
Other DBs
NCBI-GeneID:
133978722
NCBI-ProteinID:
XP_062273007
LinkDB
All DBs
Position
4:16819270..16846001
Genome browser
AA seq
2238 aa
AA seq
DB search
MSTAKSSGIKGPSKIARPGTGAPKTNPSTAKAAAADKSAASASGGDGQSAGEDFQVGERV
WVNGNKPGYIQFLGEAQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEALRGIFTRPSKL
SRTEGEANGTQTAPPSRASSPTPSVSSVASHTPAKKSTLPSTTTAKKASSTTPATPATPT
TPVTPSSNLARTNSESVSNLSETGSVKKGERELKMGDRVLVGGTKAGVVRFLGETDFAKG
EWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTRIGFPSTTPAKAKTTVRKVV
ATPSGLKRSPSASSISTMSSVASSVSAKPSRTGLLTETSSRYNRKISGTTALQEALKEKQ
QHIEQLMAERDMEKAEVAKATSHAGDMQQEITLLRDDQEQMESKMDQLRALVEAADKDKV
ELLNQLEEERRKVEDLQFRVEEACITKGDLETQTRLEHVHIKELEQSLLFEKTKAEKLQR
ELEDTRVATVSERSRIMELEKDLSLRTREVADLQLRLGTQQGSEDSNSNLSPLLEEINSL
RDQLASQDTKQQEELVKYKEKLETQEKTHSEAVAQLQASSIRLSGDNEQLQMRLSQAEKE
NTETIEQWRSKLESAIFSHRQAMEELKLSFSQGAGEQATELVETKSALERLKLDHQLALE
EAGAKHESDTKAWIQETQALKAQFSSLTDDKERLEESLRSSVERAEEQHLVEMEDVLGKL
HAAEMMVKELEEKQATLAQQAQDKDEKTKEQMVELVALRSQVAQSNQEFVTLKTQLEEVQ
SHENSQGTEVGELNSLLEGQQQEVVSLQQSLTTVKQEKDSLEQELGGLKQKLSESTEEQT
KSGKTMQETLEKLSKKEEQCTSLTTESESLRSQLNGLERKLKAADEKLEQLANDKSKLEN
DISDMMKASGDSSVQLTKMNEDLMQKARRLEELQSHLAEEKEKVADLNEKLQQDTSRKNQ
ELKETRDTHQSQISSLQEKIAALEKTVQKGETLTEELKTSQEKALSQASELHGKELEVLQ
GQVDKFKQELSASKDKTQELQKQVSELQPYKEQVQCLSAELDSYKHEVEHLSKKLEKQNI
DLEHMCKESEDIKAEKCKLEKQLSDVQSKLFALETSHKELLVQNEELLVTRDKLSKHQEE
LLTKNKHSGEEKTSLNKELEKLKTDLQDVQNENKNLKHAKGEHKAQIEELQRHNAEQNDM
LLKHKQDIQQIEAKKKQLLKDYENSCIEKNRLEEDLNESKSKLTCEKDNLILERDAARNA
KKSLDAKNAELQAKLKSLNLEKEDLTMKNTQLQTLTETLTKDQAEMSSEINAAISDKKSL
ETVKEELQNKLSVTKKDLESSVRECEELKASKLSLAKMLDEFKTSNQVTDSERLHLLQEK
DDLLANQRKVCNEKEELIKEIEELKEKLKVSTEQLSQSNEKLKDMLSSFEQEKQAFRQQS
SETEMALHAIRKEKMSLESALEQQRMDYERLVGEKGELEDKHTKATSEKNALSLERDKLA
SDIRTTKDQLDSYSRSNADLIQEKSNLTAILEETKSQKDVVEAEMNSLKREKADLQNELQ
KHNSDIKILEKGKSELVQEQSKLNMDFEKANLELVQQVDKLTKDSQRLQSLQAESDKNMQ
YLQTENKKLLQELQNLKCQSESVLEAKVLLQSQLQAESSEMNKVISDKDVLSKQIEDLQN
TLSKLKQENEEISSNLKNADEKNKSFVVNMDALGAQLKQREQETSRLSEDKEQLLSKLEE
MGKQMTVLTTEKDDLLAGQGKLEQDVSSLNTGRENWLAEKSNLLGDLEKLKASQQQLEVD
VKTLKTDKEHLEKQYKSAVAEVSASAVVKEEISSSVSQLTAQKGALQVERDEATQRVRQL
ESQLNKAISKQLEASEASGKTAEVLEQLTKEKSSLLQEKTEAQALLEELRHSKQEMETQL
DALKKENSQHQDDLNVSKEQLCTETERTKSLCQEIEKLKEAVSVKSQSLQKMQDENNKLT
QDLDSKHKGQSDLVKIKDERSKLKKQLEELKQSESTLKEQLDKEKAALQQSIHKNSALIS
EKDQEVENMRSELTALREKNASAMTLQGTIQALEQDKAHLQERLQKLEKDHAAGPDAISK
SLGDAVLDQLREDKETAESQIEFLNSVIVDLQRKNEELKDKLEKMAAAALNGNNPGELDN
YDSLDKEPSKKKAPPRLFCDICDCFDLHDTEDCPTQMQMPDSPPHTTYHGSKGEERPYCD
ICEVFGHWTDSCNDDQTF
NT seq
6717 nt
NT seq
+upstream
nt +downstream
nt
atgagcacagccaagtccagcgggatcaaaggtcccagcaagatagccaggcctgggacc
ggagcacccaagaccaaccccagtacagctaaagctgctgcggccgacaaatcagctgca
agtgccagtggaggagatggacagagcgccggggaggacttccaggtcggggagagagta
tgggtgaacgggaataagccaggctacatacagtttttgggagaggcacagtttgcccct
ggacagtgggcagggattgttctagatgagccgattgggaagaatgatggctcagtggca
ggtgtgcgctactttcagtgcgaagccctgcgaggaatatttactcgcccatccaagttg
tctcgcacagaaggggaggccaatggaactcaaacggcaccgccatcccgcgcttcctca
cccaccccttcagttagtagcgtggcctcccatactcccgccaaaaaatcaacgttaccc
tcaactaccacagccaagaaggcttcgtccactacaccagctacaccagctacaccaact
acaccagtgacaccatcttccaacctcgcacgcacaaacagtgaatctgtgtccaacctc
tcagagaccggatcagtcaaaaaaggggaaagggaactgaaaatgggtgaccgtgtactg
gttggtggtacaaaggcaggagtggtacgtttcctcggagaaacagatttcgccaaaggc
gagtggtgtggtgtggaacttgatgagcccttaggaaagaatgatggggcagtggcaggc
acaagatattttcagtgtcaacccaagtatggattatttgctccagtgcacaaagtcaca
cgaattggcttcccttccaccacaccagccaaagcaaagacaacggttcggaaagtagtt
gctacaccatcagggctgaagcgaagccccagtgcctcctccatcagtaccatgagctct
gtggcctcctctgtcagcgccaagcctagccgcacaggcctgctaacagagacatcatca
cggtataatcgtaagatttcaggcaccacagccctgcaggaagcgctgaaggagaagcaa
cagcacattgagcaacttatggcagagagggacatggagaaagctgaggttgccaaggct
actagccatgctggagatatgcagcaagaaattaccctgctcagggatgaccaggagcag
atggagtctaagatggatcagttacgtgccttggtagaagctgcagacaaagataaagta
gagctgctgaatcaacttgaggaggagcgtaggaaggtggaggaccttcagttccgtgta
gaagaagcttgtattaccaaaggagacctggagacgcagaccagactggagcatgtccac
attaaggagcttgaacagagcctgctctttgaaaagaccaaagctgagaaactccaaaga
gagttagaagacactagggttgctactgtgtcagaaagatcccgaattatggagcttgag
aaggacctttccctgcgaaccagagaggtagctgacctgcagctacgtcttgggacccag
cagggttctgaggactcaaactctaatctgtccccccttctggaagagataaactctctg
agggatcagttggcttcccaagacactaagcaacaagaagagctggtgaaatacaaggaa
aagctggagactcaagagaagacccacagtgaggcagttgcccagcttcaggcctcatcc
attaggctctccggtgataacgagcagctgcagatgcgcttaagccaggctgagaaagag
aacactgaaactattgaacagtggcgttccaagttggagtctgccattttctctcatcgg
caagccatggaggagctgaagctgtccttcagtcagggcgcaggtgagcaggcaacagag
cttgtagaaaccaaaagtgcactcgagaggctgaagttggatcaccagttggctctagag
gaggccggtgccaaacatgaatctgacactaaagcttggattcaggaaacgcaggcactg
aaggcacaattttcttctttgactgacgacaaggagcgactggaggagtcactacggtcc
agtgttgaaagagctgaggagcaacatcttgtggagatggaggatgtcctcggaaagctt
catgctgctgaaatgatggttaaagagcttgaggagaaacaagcaacgttggcacaacag
gcccaagacaaggatgaaaaaaccaaagagcagatggtagaactggtggctctgcgcagc
caagtggcacaaagtaaccaggagtttgtgaccctgaagactcagttagaggaggttcag
agccatgaaaactcacagggtaccgaggttggtgaattgaactctctgttggagggtcaa
cagcaagaagtcgtctccctacagcagagtttgaccactgtaaagcaggagaaggattcc
cttgagcaggagcttggaggcctgaaacaaaagttgtccgaaagcacagaggagcagact
aaatcaggaaaaacaatgcaagaaactcttgagaagctcagtaagaaggaagagcagtgc
acatcgctgaccacagaatcagagtctcttagaagtcagcttaatgggctggagaggaag
ctgaaggctgcagatgaaaagcttgaacagcttgcaaatgacaaaagcaagttggaaaat
gatatttcagacatgatgaaggcatctggtgatagttcagtgcagcttaccaaaatgaat
gaagacctcatgcagaaagcaaggaggcttgaggagctccagagtcaccttgcagaggag
aaggagaaggtggcggacttgaacgaaaaacttcaacaggatacatcccgcaagaaccag
gagctgaaagagaccagagatacacatcagtctcaaataagtagccttcaggagaagatc
gctgccttggagaagactgtgcaaaagggtgagactctgactgaggaactgaagacctca
caggagaaagctctctcccaggcctcagagcttcatgggaaggaacttgaggtgctgcag
ggtcaggttgacaagtttaagcaggaactgtcggcctccaaggacaaaacccaggagctg
cagaagcaggtgtctgagctgcagccatacaaggaacaggttcagtgtctttctgctgag
cttgactcctacaagcatgaggttgaacatttgtccaaaaaactggaaaagcaaaatata
gatctggagcacatgtgtaaggaaagtgaggatattaaagctgagaaatgcaaactggag
aaacagctctcagatgtgcagagcaagctttttgctcttgagacaagtcacaaggagctt
ttagtccagaatgaagaactgctagtaaccagagataagctttcaaaacatcaagaggaa
ctactcaccaaaaacaagcattcaggtgaagaaaaaacctcattgaacaaggagctggag
aagcttaaaacggatcttcaggatgtgcagaatgaaaacaaaaacctgaagcatgctaaa
ggcgaacacaaggcccaaattgaggagcttcagagacataatgcagagcagaatgacatg
cttctcaagcacaagcaggacatccagcagattgaggctaaaaagaagcaactactcaag
gattatgaaaattcctgcatagaaaagaacaggcttgaagaggacctcaatgaaagcaag
tctaagctcacatgtgagaaggacaatttaattttagagagagacgctgcaagaaatgcc
aaaaagtctcttgatgcaaaaaatgctgagttgcaggccaaacttaaatcgttgaacttg
gagaaagaagatctcacgatgaagaatacccagctgcagaccctcacagagacgttaact
aaagaccaggctgaaatgtcctctgaaatcaatgctgccatctcggataaaaagagcctt
gagacagtgaaggaggagctccagaataagctcagtgtcaccaagaaagacttggagagt
tcagtccgtgaatgtgaagaacttaaagcctcaaaactgagcctggccaagatgctggac
gagttcaagacgagcaatcaggtgactgattctgagaggcttcaccttctgcaggagaaa
gatgacttactcgcgaatcaaagaaaggtctgtaatgagaaagaggagctcatcaaagaa
atagaagaattaaaggagaagcttaaagtctcaacagaacagctgtctcagtccaatgag
aaactaaaagacatgttgtcatcttttgagcaagagaagcaagcttttcggcagcagagt
tctgaaactgagatggctctccatgctatacgaaaagaaaagatgagtctggaatcggca
ctagaacagcagaggatggattatgagcgtttggtgggggagaagggagagttagaagat
aagcacacgaaagccacttctgagaaaaatgctctttctcttgagcgagataagctagct
agcgatatccgaacaactaaagaccagttggacagttactccagatctaatgccgacctt
attcaagagaagtctaatttaacagcaattctagaggaaacaaaaagccagaaagacgta
gttgaagccgagatgaactctttaaaacgagaaaaggctgatctacaaaatgaactgcaa
aagcataactctgatattaaaattcttgaaaaaggaaagagtgagcttgttcaagagcaa
agtaaactaaacatggattttgagaaagctaatttagaacttgttcaacaggtagataaa
cttacaaaagatagtcagcgtttgcaatcattgcaggctgaatctgacaaaaacatgcag
tacttgcagacagagaataagaagctgcttcaggagctccagaacttaaaatgccagagt
gagtcagtgttggaggccaaggtccttcttcagagccagctacaggctgagtctagtgaa
atgaataaagttatttctgacaaggacgttctctccaagcaaattgaagatctgcaaaac
acattgtccaaacttaaacaagaaaatgaggagatttcttcgaacctcaagaatgccgat
gagaaaaacaagtcttttgtggtaaatatggacgcacttggcgcacaattgaagcagcga
gagcaagaaaccagtcggctgtccgaagataaagaacaactattatctaaacttgaggag
atgggcaaacaaatgaccgtcctgaccacagagaaggacgatcttttagctggacagggt
aaattagaacaagacgtttcttctctcaacactggccgagaaaattggctcgcagagaag
tcgaacctccttggagatttagagaagttaaaggctagccagcaacaactagaggttgat
gtgaagaccctaaaaactgataaagaacatttggaaaagcagtacaagagtgctgtcgca
gaggtatcagcttctgccgtcgtgaaagaagagatttcctccagcgtctcacagttaaca
gctcagaagggtgccctgcaggtggagagagatgaagctacccagcgagtcaggcagctc
gagtcccaactaaacaaagctatttctaagcagcttgaggcttcagaggcttcaggcaag
actgctgaagttctcgagcagctgacaaaagagaaatccagtttgctgcaggagaaaact
gaagcccaggctctgctggaggagctgcggcattccaagcaggagatggagacacagctc
gacgcattgaaaaaagagaattcccagcaccaagatgatctgaatgtatccaaagagcag
ctttgcacagaaactgagaggaccaagagtctgtgtcaggaaattgagaagcttaaagaa
gcagtttctgtgaagtcgcagtcgctgcagaagatgcaggatgagaacaacaagctgacc
caggacctcgacagcaaacacaaaggccagagtgatcttgtgaagatcaaggatgagcgc
tcaaaactcaaaaaacagttggaagagttgaagcaaagtgagagcaccttgaaggagcag
ttggacaaggagaaggccgccctccaacagtccatccataaaaacagtgccttaatctca
gagaaggaccaggaggtggaaaacatgaggagtgagctgactgcactgcgtgagaaaaat
gcctcagctatgacattgcagggtacaattcaggccttggagcaggacaaggctcatcta
caggagcgtcttcagaaactggagaaggaccatgctgcagggcctgacgccatcagcaag
tccttaggtgatgcagttttggaccaactaagagaggataaggagactgcagagagtcag
atcgagttcctgaattcagtcattgttgaccttcagaggaagaatgaggaactcaaggac
aaattggagaaaatggcagctgccgctctcaacgggaataatccaggcgagctggataac
tacgatagtctcgacaaggagccctcgaagaagaaggctcccccaaggctgttctgcgac
atctgcgactgcttcgacctccacgacacagaggactgtcccacacaaatgcagatgccc
gactcccccccacacaccacctaccacggcagtaagggcgaagagcggccctactgcgac
atctgcgaggtctttggccactggaccgattcctgtaatgacgaccagaccttttga
DBGET
integrated database retrieval system
