Scomber scombrus (Atlantic mackerel): 133978764
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Entry
133978764 CDS
T10651
Name
(RefSeq) paired amphipathic helix protein Sin3a-like isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
133978764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssco03036
]
133978764
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
133978764
REST complex
133978764
Heterochromatin formation proteins
Other heterochromatin formation proteins
133978764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
Motif
Other DBs
NCBI-GeneID:
133978764
NCBI-ProteinID:
XP_062273458
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Position
1:complement(29860437..29877787)
Genome browser
AA seq
1299 aa
AA seq
DB search
MKRRVEDQEPIFASQQQQSRRPPVQGIAESFQHRALAPAPTVIEAAADNMQPSTGIQYSL
PQGYQVPTMPQSTGGHGHNSTAPHVGPHAHSIAVQSQGPAVVQGHVHAPAPLTSAQGQQQ
FQRLKVEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPD
LIMGFNTFLPPGYKIEVQTNDLVNVTTPGQIHYITPHGISVQNLPVSGAPSQPASQHQHQ
SLPQAGPHTTTATTTPPIPAQPAANKTNKPMQSPAHTPTSQPNPSIPSYASPRSPSVQSH
TPVSSTPSGGPPLQNNQPVEFNHAINYVNKIKNRFQDQPDIYKAFLEILHTYQKEQRNAK
EAGGNYTPALTEQEVYTQVARLFKNQEDLLSEFGQFLPDANSSVFSSQLLGKTAPDRAES
VRNDHGGTVKRPLLNNKQRLSQNGLPIRRPVGVGVGVTPPVKKKPKLVMKDHGMTEVSKH
STSTETMFFEKVKKALRSSEAYDNFLRCLHIFNQEVISRAELVQLVIPFLGKFPELFTWF
KNFLGYRESSHGESSQAESLPKERATEGIAMEIDYASCKRLGSSYRALPKSYQQPKCTGR
TPLCREVLNDTWVSFPSWSEDSTVVSSKKTQYEEHIYRCEDERFELDVVLETNLATIRAL
ETVQRRLSRMSAEEQLRFKLDNTLGGSSEVIHRKAIQRIYGDKAHDIIDGLKKNPAVSVP
IVLKRLKIKEEEWREAQRGFNKIWRDQNEKYYLKSLDHQGINFKQNDTKVFRSKTLLNEI
EMLYDERQERASEETATPPPSGPHMNLTYDDSQILEDAAALIIHHVKRQVGIQKEDKYKI
KQIIHHFIPDLLFARRGELSDVEEEEEEEEEDMEVDQDGPKKHNGLPGNSPSKSKLLFSN
TAAQKLRGTDDAYNLYFVNNYWYIFLRLHHILCSRLLRIYGQAEKQIEEDAREKEWEREV
LGVKRDKNENPAIQLKMKEPMDVDVEDYYSVFLEMVRNLLDGNMEPAQYEDSLREMFTIH
AYIAFTMDKLIQSIVRQLQHLVTDDVCSRVTDLYLSESANKATGGTVSTQASRTTAESTY
QRKAEQLMTDENCFKLMFLKNRGSVSLAMELLDTEDDNSDEPAEAERWSDYVGRYLNSDS
ASPELREHLAQKPVFLPRNLRRIRKCQRGWEQLQQERMSKSSSDKSQDGKSELKMECMFK
LNSYKMVYVCKSEDYMYRHTALTRAHQSQQRVNTRLHRRFQKWLDSWAKEHVTSDMAADN
RKWLMGDGQEGLVSCTTTCNPEILHYLNVNKYRVKYRTL
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcgtgtggaggaccaggaaccaatatttgcatctcagcaacagcaatcacgt
cgccccccagttcagggtattgcagagagcttccagcaccgggccctcgccccggcccct
actgtgatagaggcagccgcagacaacatgcagccctccaccggcatccagtattctctc
ccccagggctaccaggtgcctacaatgcctcagagcacaggtggtcatggacataacagc
actgcacctcatgttgggccccatgcacacagcatagcagttcagtcccagggccctgca
gtggtccagggacacgttcatgcaccggcacccttgacttcagcccaaggacagcagcag
tttcagcgactgaaggttgaagatgccttgtcctatctggatcaagtgaaactgcagttt
gggaatcagccacaagtttataatgatttccttgatattatgaaggagttcaagtcacag
agcatagacactcctggagttatcagccgtgtgtcccaactcttcaagggccatccagac
ctcatcatgggtttcaacactttcttgccacccggatataagatcgaggttcaaaccaac
gatctggtcaatgtgaccacaccaggccagattcactacatcacccctcatggtatctct
gttcaaaacctccctgtaagtggagcgcccagccaacctgcaagccaacaccagcaccag
agtctgccacaggctggcccacacaccaccacggccactaccaccccacccatccccgcc
cagcctgcagcaaacaaaaccaacaagccaatgcagtctccagcccacacccccaccagc
cagcccaacccgtctatcccatcctacgcctcaccacgctcgccttcggtccagtcccac
actcctgtgagcagcacaccgtctggtgggccgcctctccagaataaccagcctgtggag
tttaaccatgctataaactacgtcaacaagatcaagaaccgcttccaggaccagccagac
atctacaaagccttcctggaaatcctgcacacataccagaaggaacaacgaaatgctaaa
gaggcaggaggcaactacaccccagcactgactgagcaggaggtctacactcaggtggca
aggctcttcaagaaccaggaggacctgctctcagagtttggacagttcctccctgatgca
aacagctcagtattctcttcccagctgctgggcaagactgccccggacagggcagagtca
gtccgtaatgatcatggcggcacagtaaagagacccctactaaacaacaaacagagactg
agccagaacggcctgccgatcaggagacctgtgggagtgggagtgggagtcacgccccca
gtcaagaagaaacccaaattagtgatgaaggaccacggcatgactgaagtcagcaaacac
agcaccagcactgaaactatgttctttgagaaggtgaagaaggctcttaggagctctgag
gcttatgacaacttcctgcggtgtctgcacatcttcaaccaggaggtgatttcgcgtgcc
gagctggtccagttagtcatcccatttcttggaaaattcccagagcttttcacatggttt
aaaaacttcctgggctaccgagaatcgagccacggggaatcgagccaagcagagagttta
cccaaggagcgtgcaacagagggcatcgccatggagattgactatgcttcctgcaagagg
ctggggtccagctacagagcactgccaaaaagctaccagcagcctaagtgcacagggagg
acgccactgtgcagagaggttttgaatgacacatgggtctcatttccatcatggtctgag
gattctacagttgtaagctccaagaagactcaatatgaggagcacatttacagatgtgag
gatgagcgctttgagctggatgttgtgttggagaccaaccttgccacgatacgagccctt
gagacagtgcagcggcggctttctcgcatgtctgctgaggagcagctgcgcttcaagctg
gacaacacattgggcggctcctcagaggtaattcaccgcaaagctatccagaggatatat
ggagacaaagcccacgacatcatcgacgggcttaagaagaacccagctgtgtccgtcccc
atagtgctgaagaggttaaaaataaaggaggaagagtggagagaagcccagagaggcttc
aacaaaatctggcgggatcagaatgagaagtattacctgaagtcactcgaccatcaaggc
atcaacttcaagcagaatgataccaaagtgtttcgctcaaagaccctgctcaacgaaatc
gagatgctgtatgatgagcgccaggagagagcatcagaggaaactgccacaccgcctccc
agcggcccacacatgaacctgacctatgatgacagccagatcctggaggatgccgccgcc
ctcatcatccaccatgtcaaaagacaagttggcatccagaaagaagacaagtacaagatc
aaacagatcatccaccacttcatccctgacctgctttttgctcggcgaggtgagctctct
gatgtggaggaagaggaagaagaggaggaagaggacatggaggtggatcaagacggtccc
aagaagcacaatggcctgccaggcaacagcccatcaaagtccaagctcctcttcagcaac
acggcggctcagaagctgcggggcacagatgatgcttacaatctgtacttcgtgaataac
tactggtatatcttcctccgtcttcatcacatcctctgctctcgtttgctgcgaatctac
gggcaggcggagaagcagatcgaggaggatgcccgcgagaaagagtgggaaagagaagtt
ttgggggtcaaaagagacaaaaatgaaaatccagcaattcaacttaagatgaaggagccc
atggacgttgatgtagaggactattactctgtctttttggaaatggtgcgtaaccttttg
gatggaaacatggagccggctcagtacgaggactccttgagggaaatgtttactatccat
gcctacattgccttcactatggacaaactcatccagagcattgtccggcagctccagcac
cttgtcactgatgatgtttgttcacgtgtgacggacttgtacctgagcgaaagtgccaat
aaagccacaggaggcacggtctccacgcaggcatccagaaccacagcagagagcacctac
cagcgcaaagcagagcagctcatgaccgatgagaactgcttcaagttgatgtttttgaag
aaccgaggttctgtcagtctggccatggagctgctggacacagaagatgacaactctgat
gagccagccgaggcagagaggtggtcagactacgtgggcagatacctgaactcagattca
gcctctccagagctgcgtgagcatttggcccagaagccggtgttcctccccaggaatttg
aggaggataaggaagtgccagagaggatgggagcaactgcagcaggagagaatgtccaag
agctcctccgacaagtcgcaggacggcaagagtgaactaaagatggagtgcatgttcaag
ctcaactcctacaagatggtgtacgtctgcaaatcagaggactacatgtacaggcacaca
gcactcacacgggctcatcagtcgcagcagcgggtcaacacacgcctgcacagacgcttc
cagaagtggctggactcttgggccaaggagcacgtgacgagcgacatggctgccgacaac
cgcaagtggctgatgggagacgggcaagaaggcctggtgtcttgtaccaccacctgcaac
ccagagatcctccattatctcaacgttaacaagtaccgggtgaagtacagaacactgtag
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integrated database retrieval system
