Scomber scombrus (Atlantic mackerel): 133978804
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Entry
133978804 CDS
T10651
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04010
MAPK signaling pathway
ssco04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
133978804 (cacna1ba)
04020 Calcium signaling pathway
133978804 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
133978804 (cacna1ba)
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
133978804 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
133978804
NCBI-ProteinID:
XP_062273115
LinkDB
All DBs
Position
4:5038546..5192520
Genome browser
AA seq
2371 aa
AA seq
DB search
MARFEDELSNRYGGNCPAGPARGAIRQPGPPGVQRMYKQTMAQRARTMAIYNPIPVKQNF
LTVNRSLFIFSEDNIIRKYAKKITEWPPFEYMILTTIIANCIVLALEQHLPASDKTPMSE
RLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRTGWNIMDFVVVLTGILATVGADFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLDFYMGK
FHRTCFSTETGEQVEEFPCGMEAPARTCGNGTICKEYWTGPNYGITNFDNILFAVLTVFQ
CITMEGWVEILYSANDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEKR
QEFLKLRRQQQIERELTGYLEWICKAEEVMLAEEDKHAEEKSLDGAWYKRKQHNSVLKRA
KKSKNDLINAEEGEDHFTDISSVAPQGSPFARANAKGKNDNSSYFKRKEKRIRFTIRRLV
KSQSFYWTVLCLVGLNTLCVAIVHYDQPEWLTYALYLAEFVFLGLFLAEMSMKMYGLGPQ
NYFHSSFNCFDFGVIIGSIFEVVWAAIKPGASFGISVLRALRLLRIFKVTKYWNSLRNLV
VSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDTFPAAILTVFQI
LTGEDWNAVMYHGIESHGGVHGGMFSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELT
KDEEEQEEAINKKIALQKAKEVKEVSPMSAANMSITASYVCTPVHHYLSKEQQKSMKTMS
VWEQRANQLRRQNRASCEALYSELEPEERLRLSTALHIRPDMMTHLDRPLVVEPRDGPLL
GGHQHHHHKSCMPDEDETATDPPPPLPPQPRRRHHHRDRDRTRTREETNNNGETSKEGRH
HVHHSRSKDHNGSRGKEEKSERSRSQEGGRRNHHQSSVDDSGGGGVTNEREHRHHHSHRQ
SQEGNGTVNSGGRGERRSHHKDGRSSNRDGDRNSRGDGGANGERRRHRTHGSRGQCTAEG
EESNDREKTQCHRFGDSEGESLAISPQEGSVEPNWPLDQPEDSDNQRNVRRTGQTSIQIP
PVTITSPPGETTLIQLNSIDCETMPMNEKTLEDLSQSGPKPILPYSSMFIFGQANPVRRL
CHYIVTLRYFEMSILVVIAMSSIALAAEDPVWTNAPRNNVLKYLDYAFTGVFTFEMVIKM
VDLGLLLHPGAYFRDLWNILDFIVVSGALVAFAFSSFMGRSQQGVTRGTKGKDISTIKSL
RVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGKFFF
CTDESKGLEKDCKGQFLDYEKDDVAAMPREWRKYEFHYDNVLWAFLTLFTVSTGEGWPTV
LKHSVDATFEDKGPSPGYRIEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKALSEC
SLEKNERACIDFAINAKPLTRYMPENTQSFQYRMWKFVVSPPFEYSIMIMIALNTVVLMM
KFHGAPDFYEAMLKNLNIVFTTLFSLECILKIIAFGPLNYLKDAWNVFDFVTVLGSITDI
LVTEIKTTDRLLNLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLF
FIYAIIGMQVFGNIDLNEDTAINHHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSHRAC
DERSGNHGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDE
FIRVWAEYDPAACGRIKYLDMYQMLLHMSPPLGLGKKCPPRVAYKRLVKMNMPIADDNTV
HFTSTLMALIRTALEIKLASGMVAQRLSDAELKKELSTVWPNLSQKTMDLLVTPHKPNEL
TVGKVYAALMIFDYYKQNRAKRLQLMLPSISPPQCKVQALFKPLLPLTHMQEKDPPMMVN
SVEPPSMLQPQPKPPAKPQPQTRPSSNSLNNGGTLPGHEHPSSWVMEKPKEGPRAKQKRN
LSRGPSEDTPDTAVIQESVEMKKMETSASSTIPVPGSGLENQGRAASMPRLNAELQSVPD
ASPMKRSASTVAPQRPQEVNLKDYTLEKPNQDKPHHHHHHHRCHHRRDRDKDRDREKRQR
SLDTPLAGQAPGSAGAPGEAVPDPVTSRERAHDRGRSHERKHHHSSADKQRYYSCDRYCS
REHCHTKSATASCAASPNEAQETSNKQGSGWVKGSPVALSSSSSTPSRGRRQLPQTPLTP
RPGVAYKTANSSPVHFVSSQASLSPGRLSRGLSEHNALRHSGSRHFPCPVTRISSEPFLG
RGHGEALGSPYGSLRDQLDVFQDAASLSPSPCTGSSSRTALPRMMGALLPAPQQNLGVPN
GYHFSFGGSTSPGSGVRAPRYYQEAEEDEWC
NT seq
7116 nt
NT seq
+upstream
nt +downstream
nt
atggctcgctttgaagacgaactgtccaaccgctatggaggcaactgtcccgcgggcccg
gccagaggggccatccgacagccggggcctccgggggtccaaaggatgtacaagcagacg
atggcccagagagccaggaccatggccatttacaaccccatcccagtcaaacagaacttc
ctcaccgttaaccgctctctcttcatcttcagtgaggataatatcatacggaaatatgcc
aaaaagatcacagaatggcctccatttgagtacatgatcctgaccaccatcatagcaaac
tgcatcgtcctggctttggagcaacacctaccagcctcagacaaaaccccgatgtcagag
cgtttggacgacacagagccctactttattggaatattttgtttcgaggctggcatcaag
atcatcgccctgggctttgcctttcacaaaggctcctacctgcgtactggatggaatata
atggactttgtggtggtcctaacagggatcttggccactgtgggggctgattttgacctg
agaacactaagggcggtgagagtgctgcggccgctgaagctggtctctggcattcccagt
cttcaggtggtgttaaagtccatcatgaaagccatggtacctctgctgcagatcggcctg
ctgctctttttcgccatcctcatgttcgccatcatcggcctcgacttttacatgggcaag
ttccaccgcacctgcttctcgacggaaacgggtgaacaggtagaagagttcccctgtggc
atggaggctccggcaaggacctgcggcaacggcaccatctgtaaagaatactggaccgga
cctaactatggcatcaccaactttgacaacatcctgtttgctgttctcaccgttttccag
tgcatcaccatggagggatgggtggagatcctctacagcgccaacgatgcctcagggaac
acgtggaactggctgtacttcatccccctcatcatcatcggttccttctttatgctcaac
ctggtgctaggtgtgctgtcaggggagtttgccaaggagagagagcgggtggagaagagg
caggaattcctgaagctccgcaggcagcagcagatagagagagagttgactggttacctg
gagtggatctgcaaagcagaggaggtgatgctggctgaggaggacaagcatgcagaggag
aagtctctggatggagcgtggtacaaaaggaaacagcacaactctgtgctgaaaagagcc
aagaagagcaagaatgacctcatcaatgcagaagaaggcgaggaccacttcactgacatc
tcatctgttgccccccaagggtcgccgttcgccagggccaacgcgaagggcaagaacgac
aactcgtcttacttcaagaggaaagagaagaggattcgtttcaccatccgccgtctggtc
aagtctcagagcttctactggactgtgttgtgtctggtcggcctcaacacgctatgtgta
gctatcgtacactacgaccagcctgagtggctcacctatgcactgtacctggctgagttt
gtattcctgggcctgtttttggcagagatgtccatgaaaatgtacggccttggaccccag
aactacttccattcctcattcaactgttttgactttggggtgattattggcagtattttt
gaggtggtctgggctgccatcaaaccgggggcctcatttgggatcagtgtcctccgggct
ctgagactgctcaggatcttcaaagtcaccaagtactggaactctttgagaaacctggtt
gtatctctactcaactccatgaagtccatcatcagcctgctgttcctcctcttcctcttc
attgtggtcttcgctctgctgggcatgcagctgtttggtggacagtttaattttgaagac
gaaaccccgacaaccaactttgacacgttcccagcagcaattctcaccgtcttccagatc
ctgactggagaggactggaacgcagtcatgtatcacgggatcgaatcacatggcggagtc
cacggaggaatgttctcctcaatttatttcatcgtgctcaccctctttggaaactatacg
ctcctcaacgtcttcttggccattgctgtcgataaccttgcaaatgcccaggagctcact
aaggatgaagaggagcaagaggaggccatcaataagaagatcgcccttcagaaagccaag
gaagtaaaggaggtcagccccatgtcagccgctaatatgtccatcacagcgagttatgtc
tgcaccccagtccatcactacctgagtaaggagcagcagaagtccatgaagacgatgtcg
gtgtgggagcagagggccaaccagctgagaaggcagaaccgagcaagctgcgaggccctc
tacagtgagctggagcctgaggaacgtctccgcctgtccacagcgctccacatccggcca
gacatgatgacccaccttgaccgtccacttgttgtcgagccccgggatggtcctttgctc
ggcggccaccaacaccaccatcacaagtcctgcatgccagatgaagacgagaccgccacc
gaccctcctcctcctctgcctccccagccccgccgccgccaccaccacagagacagggac
cgaaccagaaccagggaggagacaaataacaacggtgagaccagtaaggagggcaggcac
catgtccatcacagccgctccaaagatcacaatggcagccggggcaaagaggagaagagc
gagaggtcccggagccaggagggaggcaggaggaatcaccatcagagctcggtggatgac
agtggaggtggaggagtcacgaacgaaagagaacatcggcatcatcattcacaccggcag
tctcaagagggcaatgggacagtgaacagtggagggaggggagagcgaagatcccaccac
aaagatggacgttcgtctaacagggatggggataggaattccagaggagatggtggggcc
aatggagagaggaggagacatcggacccatggatccaggggccaatgcacagctgaagga
gaggagtccaatgacagagagaaaactcaatgtcacaggtttggtgactcagagggggag
tctctagccatctccccccaggagggctctgtggagcccaactggcctcttgaccaacct
gaggactcagacaaccagaggaacgtcagacgaactggccaaacctctatccaaattcct
cctgtgaccatcacatccccacctggagagaccacacttatacaattgaacagtattgac
tgtgagacaatgcctatgaatgagaagaccttggaggatctcagtcagagtggacccaaa
cccatcctgccttacagttccatgttcatctttggacaggccaatccggtgaggcggtta
tgtcactatattgtgactctgcgttattttgagatgtccatcctggttgtcattgccatg
agcagtatcgctttggcagcagaggatcctgtctggaccaatgctccccgcaacaatgtg
cttaaatatctggactacgccttcactggggttttcactttcgaaatggtgattaagatg
gtggacctgggcctgctgcttcatcctggagcttacttcagagacctgtggaacatttta
gacttcattgtggtcagtggggcgctggtggcttttgcattttcgagcttcatgggtaga
tcgcaacaaggtgtgaccagggggaccaaaggcaaagacatcagcacgatcaagtctctg
agggttctccgagtgctccggcctctcaagactatcaaacgcctgccaaaactcaaggct
gtttttgactgtgtggtcaactccttgaagaacgtgctgaacatcctcatcgtttacatc
ctcttcatgttcatctttgccgttatcgccgttcagctcttcaaggggaaattcttcttc
tgcacagatgagtccaagggcttggagaaggactgcaaagggcagtttctagactatgaa
aaagacgatgtggctgctatgcccagagagtggaggaaatatgagttccattatgacaat
gtgctgtgggccttcctgaccctcttcactgtgtccaccggggagggctggccaacagtc
ttaaagcactctgttgatgctacctttgaagacaagggtcccagtccaggctaccggata
gagatgtccatcttctacgtggtctacttcgtggtcttcccttttttctttgtcaacatc
ttcgtcgctctgatcatcatcaccttccaggaacagggcgacaaggccttgtctgaatgc
agcttggaaaagaatgagagggcctgtattgattttgccatcaatgccaagcctctgaca
cgctacatgccagagaacacccagtccttccagtacaggatgtggaagtttgtggtctca
cctccgtttgagtactccatcatgatcatgatcgccctgaacactgtggtactgatgatg
aagttccatggagctccagacttctatgaagccatgctgaagaacctcaacattgtcttt
accactctattttctctggaatgtatcctcaagatcattgctttcggcccactgaattac
ctaaaggacgcctggaatgtgtttgactttgtgacagtgttgggtagcatcactgacatc
ctggtcactgaaatcaagactacggacagactgttgaacctgagcttcctgaggctgttc
agagccgctcggctcatcaagctgctgaggcagggttacaccatccgcatcctgctgtgg
accttcgtccagtccttcaaggccctgccttatgtttgcctgctgattgctatgctgttt
ttcatttacgccatcattgggatgcaggtttttggcaacattgatctgaatgaggacaca
gctatcaatcaccacaacaacttccgcactttcctccaggctctcatgctgctgttcagg
agcgcgacgggcgaggcatggcacgagatcatgttatcatgtctgagtcaccgagcctgt
gacgagcgatcggggaatcatgggaaggagtgcggcagtgattttgcctacttctacttt
gtctcctttatcttcctctgctccttcctgatgctgaacctgtttgtagccgtcataatg
gataactttgagtaccttactagagactcctccatcctggggcctcatcacctcgatgag
ttcatcagggtctgggctgagtacgacccggctgcgtgtggccgtatcaagtacctcgat
atgtatcagatgctgctccacatgtccccacccttaggtttgggaaagaaatgcccgcca
agagtcgcctacaagcgcctcgtcaaaatgaacatgcccatcgccgacgacaacaccgtc
cacttcacctccaccctgatggccctgattcgcaccgccctggagatcaaactggcctca
ggtatggtggcccagcggttatctgacgctgagttaaagaaggaattgtccacagtgtgg
cccaacctttctcaaaagaccatggacctgctagtgacgccacataaacccaatgaactg
acagtaggaaaggtttatgcggccctgatgatctttgactactacaagcagaatcgagcg
aagaggctgcagctcatgttgccatccatctctcctccacagtgcaaggtccaggctctg
tttaagccattgctgcctctgactcacatgcaggagaaagatccgcctatgatggtaaac
agtgtggagcctcccagcatgcttcagccccagcctaaaccccctgccaagccccagcca
cagaccagacctagctccaactccctcaacaatggaggcactctgccaggtcatgagcac
ccatcgtcctgggtgatggagaaacccaaggaagggccccgcgctaagcagaaaagaaac
ctgtccaggggcccgtcagaggacacaccggacaccgctgtcattcaggagtcagtggag
atgaagaagatggagaccagtgccagcagtacaattccagttcctggttcaggtctggag
aaccagggcagggctgcttctatgcctcgcctcaacgctgagctgcagtctgtccctgat
gccagcccaatgaagcgctcagcctccactgtggccccacagcgcccccaggaggtcaac
ctgaaggactacaccctggagaaacccaaccaggacaaaccccaccaccatcatcaccac
caccgctgccaccaccgcagagacagagataaagacagagacagagagaagaggcagagg
tctttagatacacctctggctggacaagctcccggctctgcgggtgcaccaggagaggca
gtgccggacccagttacctccagagagcgagctcacgaccgtggacgatcccacgagagg
aaacaccaccactcgtcggcggacaagcaacgctattattcctgcgaccgctactgcagc
cgggaacactgccacaccaaatctgccaccgccagctgtgctgcctcccccaacgaggcg
caggaaaccagcaacaagcagggcagtggttgggttaaaggcagcccagtggcactgagc
tccagttctagcacgccaagccgcggacgtcggcagctcccccagacccccctcactcca
cggcccggggtagcctacaagactgccaattcttcccccgtgcactttgtgtccagccag
gcctctctgagtcctggccggctgagtcgcggcttgtcagagcacaatgctctccggcac
agcggctcgcgccacttcccctgccccgttactcgtatcagctcggagcccttccttggc
cggggccacggcgaggccctgggcagcccctatggcagcctccgggaccagctggacgtc
ttccaagatgctgcgtcactgtcgcccagcccctgtaccggaagctcatctcggactgca
ctgcctcgcatgatgggagctctgcttcccgctccacagcagaaccttggggtgccgaac
gggtaccacttcagcttcgggggcagcaccagcccaggctctggcgtcagggcacccagg
tattaccaggaggcagaggaggatgaatggtgctag
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integrated database retrieval system
