Scomber scombrus (Atlantic mackerel): 133978871
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Entry
133978871 CDS
T10651
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin type-1 domain-containing protein 4-like
KO
K23377
thrombospondin type-1 domain-containing protein 4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
133978871
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ssco04990
]
133978871
Domain-containing proteins not elsewhere classified [BR:
ssco04990
]
Thrombospondin domain-containing proteins
ADAMTS-like proteins
133978871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP1_ADAMTS
TSP_1
ADAMTS_spacer1
ADAMTS_CR_3
TSP1_spondin
PLAC
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
133978871
NCBI-ProteinID:
XP_062273198
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All DBs
Position
1:9085157..9122903
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AA seq
979 aa
AA seq
DB search
MQQDCVWTIRVSVLLLLLWPDPLDFQHTTDHRKVPQRAEPQQEFRAEHGEIQGSWGSWGP
WSTCSRTCGGGVQEQSRPCLPVYTPSQYPSVRADIHHHQPGHVISALRPTVPLHRDTVRS
SNSSSRGELGRTRPGGRRYDNXNYXDTVYTRWRVSHISPGRYGYGRAPYVAPLQTEADQS
SGMTRPHRQRRSAAADAHHLTAGGHGGHRSNNLDPSNNLRHYSRPYMQPINNQIWAPLYQ
PGSAHQTEVQQEVPSGGQTSGTQQHQERPYNPLPTSHCTGEQAHYQLCNSNACPPFSRHI
RAVQCSSYNNQPFMGRLYEWEPFNEVSEDQHCELNCRAIGFRFYVRQSEKVIDGTPCGQN
DTSLCVAGKCTSLGCDEYLGSGKVMDKCGVCGGDNTTCRMVSGVFKHSLSMIGYHKIVEI
PEGATMINVTEMVKSRNYLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYRRPNEIRST
AGESLHADGPTNEILDVFMIFQQPNPGVHYEYILPSEKPVNPQQPNHRPEGNAVNGQSGS
DHHSNPHQENYNPAGEGRYPPPLPDNQVPVVEPPRREREYNWKLAGATECSASCGKGFRH
SIFHCVHRLNHVQVSDTLCDSSSRPTPQEEPCNLQPCPAFWDIGEWSECSKTCGLGMQHR
QVLCRQVYANRTLNVHTSRCQHLERPETASTCQLKICSEWQIRSEWTACTVPCGLGQRSR
DVHCVSNVGDVVLDEECNMNLRPIDIENCDMGPCAKSWFYTEWGNRCSAECGMGVRTRGI
LCLTNHIGSLPLEGCGSERPADSQVCNNGPCENRIEWYTGPWNQCSAECGAGSQQRSVVC
LMKSEEGFTVMPPYECSSLERPLNQQSCNLKACGAKWYHTDWSACSKTCEGGFRIREVRC
LSDDMLSSEDCDEKMKLTEKEDCNPEPCIPHIDENCRDKYFNCNVVVQARLCVYDYYKTT
CCASCSRVAHRQPIHRARS
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaagactgtgtctggactatcagagtttctgtgctgctgctgttgctttggccg
gaccccctagacttccaacacacaacagaccacaggaaggttcctcagagggcagagccc
caacaggagttcagggcagagcatggagaaattcagggctcctggggctcctggggtccc
tggtcaacctgttctcggacctgtggaggaggagtacaagagcagagcaggccctgccta
cctgtttacactccatcccaatacccttctgtaagagcagacattcaccaccaccagcca
ggccatgtcatttcagccctgcggcccacagttcctctgcaccgtgacacagtcaggtcc
tccaacagcagcagccgtggagagctggggaggaccaggcctggtggacgcaggtacgac
aactgaaattattaagatactgtatatactagatggagggtcagccacatcagtccgggg
aggtacggctatgggagagcaccttatgttgctccgttgcagacggaggcggaccagagc
tctgggatgactcgcccccacagacagaggcgctctgctgcggcagatgcccatcacctc
actgctggaggccacggcggccacaggtcaaacaacctggacccctccaacaacctccgc
cactacagcagaccctacatgcagcccataaataaccaaatctgggcccccctctaccag
cctggctcagcccaccagactgaggtgcagcaggaggtaccatcaggtggccagacctct
ggaactcagcagcaccaagagagaccgtacaaccccctgcctacttcccactgtacagga
gagcaggctcactaccaactctgcaacagtaatgcctgtcctccattcagcagacacatc
agggctgttcaatgttcttcatacaacaaccagcctttcatgggcagactgtacgagtgg
gagcctttcaatgaggttagtgaagatcagcactgtgaactcaactgccgggccataggc
ttcaggttctacgtgcgacagtcagaaaaggtgatcgatgggacgccctgcggacagaac
gatacctctctctgtgtggcgggaaagtgtacgagtctaggctgcgatgagtatcttgga
tcaggaaaggtgatggacaagtgtggcgtgtgtggaggcgacaacacaacctgcaggatg
gtctccggagtcttcaaacacagtctgtccatgatcggctaccacaagatagtggagatc
ccagagggagccaccatgatcaacgtcacagagatggtgaagagccgaaactacctagct
ctccgaagccgatcggggcgatccatcattaatggaaactgggctattgaccggccaggg
aagtatgagggaggggggaccatgttcacctaccgcaggcccaatgaaatccgtagtaca
gccggggaatccttacatgctgatgggcccaccaatgagatcctggatgtttttatgatc
ttccagcagccaaaccctggtgttcactatgagtacattctgccttctgagaaaccagtc
aaccctcagcaaccaaaccacagaccagaagggaatgctgtgaatggacagagtgggtcc
gaccatcacagcaatcctcaccaggaaaactacaacccagcaggtgaggggaggtaccct
cctcctctccccgacaaccaggtacctgtcgtagagccacccagacgtgagagagagtac
aactggaaactggctggtgctacagagtgcagcgcctcctgtggtaaaggtttcagacac
tccatctttcattgcgtccaccgcctgaaccatgtccaggtttcagacactttgtgtgac
agcagcagcagaccaactccacaggaagagccctgcaacctgcagccctgcccggcattc
tgggatattggagagtggtcagaatgcagtaagacctgtggcctggggatgcagcaccgg
caggtactgtgtcgccaggtttatgctaaccgcaccctcaatgttcacacaagtcgctgc
caacacctggagcggcccgaaaccgccagtacctgccagctgaagatctgcagtgagtgg
cagatccgctccgagtggaccgcatgcacggtgccatgtgggctgggtcaaaggtcacgg
gatgttcactgtgtcagcaatgtgggtgacgttgttcttgatgaggagtgcaacatgaat
ctgcggcccatcgacatagagaactgtgacatgggaccctgtgcgaagagctggttctac
actgagtggggcaataggtgctctgctgagtgtgggatgggtgtacggacccgaggaatc
ctctgcctgaccaaccacatcggtagccttcctctggaggggtgtggcagcgagcggcct
gcagactctcaggtctgcaacaacggcccctgtgagaatcgcattgagtggtacacaggc
ccctggaaccagtgttctgcagagtgcggcgcaggcagccagcagaggtcggtggtgtgt
ctgatgaaatcagaggaaggattcacagtcatgccaccatatgagtgttcctccctggaa
cggcccctcaatcagcagagctgcaaccttaaggcctgtggagcaaagtggtaccacact
gactggagtgcttgttcaaaaacatgtgaaggaggtttccgcatacgggaggtgcgctgc
ctgtctgatgacatgctttccagtgaggactgcgacgagaagatgaaactaacagagaag
gaagactgcaacccagaaccttgcatacctcacatagatgagaactgcagagacaagtac
ttcaactgcaatgtagtggtccaggctcgcctctgtgtgtacgattactacaagactaca
tgctgcgcttcatgttcgcgagtggcccacagacagccgatccatcgggcccgcagctaa
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