Scomber scombrus (Atlantic mackerel): 133978919
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Entry
133978919 CDS
T10651
Symbol
gapvd1
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133978919 (gapvd1)
Membrane trafficking [BR:
ssco04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
133978919 (gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
Motif
Other DBs
NCBI-GeneID:
133978919
NCBI-ProteinID:
XP_062273259
LinkDB
All DBs
Position
4:complement(9852312..9885290)
Genome browser
AA seq
1475 aa
AA seq
DB search
MVKPDIHTLAHHLKQERLYVASEKQLIQRLNSDVLKTAERLYRAAWIAKQQRINLDRLIL
TSAEASPAECCQHAKMLEDTQFVDGYKTLGFQETIYGEFVARLRENPRLVASCLVAGERL
NQEHTQGVIYTVFTSLYGNCIMQEDESYLLQVLRYLVEFELKENDNPRRLLRRGTCAFSI
LFKLFSEGLYSAKLFLTATLHEPIMQLLVEDEDHLETDPAKVTERLTPAQQERFGEKGSE
GYKQRVQAAVEANEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVERLEVGE
VRTMCTDLLLTCFICPAIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMADDDADPR
RKSCLSKFDKSCVAAFLDVVIGGRAVETPPMSSMNLLEGLSRTAVYITHHQLLALVDFVR
SVTAGDHLREEDHMALETLLANVPQSRTVKSNSLELTPSNTPQLSPATTPANKKNRLPIG
QHLAAITSWDPTTTALSAHIPLVTPFAAARSRSRTNIAQEGEAEASSQESLQELMPEEVL
VISLGFGPQNVPGMMSENEVLNLQMADGAPGDGHADDTKLHGKPDKTLRFSLCSDNLEGI
SEGPSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQLLEHEQATTQDNLDDKLRKFEI
RDMMGLTDDRDISETVSETWSTDVLGSDFDPNMDEDRLQEIAGAAAENMLGSLLCLPGSG
SVLLDPYGSTISETTSEAWSVEVLPSDSEAPDLKQEERLQELESCSGVGSTSDDTEVREV
SSRPSTPGLSVVSGISATSEDIPNKIEDLRSECSSDFGGKDSVTSPDGEESGHGSHHLTS
PPSQADSLLAMFDPLSSGEGSCTGTIVRPKVHYARPPHPPPDPPIPEASALGQDTRHSLF
TPHCLAQAELEHTKQRHSFPDRLVRSRSSDIVCPGRRPTSDPGLNRRVAVEERDPAGAFA
LGPSSSPSKDSLKGETEDRKDSDDEKSDRNRPWWKKRFVSAIPKAPIAAFRKRDKQEKDD
NVPERIPQDDPLPRQSTQAQAAEDILDKYRNIKRTSPSDGAAAGASYDGTGDLCVEDSVH
DSPREDTLQNISTDDLPDSASQTAQQHDSKFSFSDAKKKLRLALCSADSVALPIMTPATT
RNGLPDHMDPEDNEIVCFLKVQLAEAINLQDKNQMAQIQETTRCVSRFDARTCRKLLAAI
AEDYRKRAPYIAYLTRCRQGLQTSQAHLERLLTRVLRDKEVANRYFTTVCVRLLLEHMES
KMLDFIKAFQGCTASDDKTAAVEDFLRYLYGAMARDAIWQYASEDQLQDAQMAIERSVMN
RIFKLAFYPNQDGDILRDQLFHEHIQRLSKVVTANHKALQIPEVYLKETPWPSAQSEIRT
INAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPVLVFVLIRANPPCLLSTVQ
YINNFYASRLSGEECYWWMQFTAAVEFIKTIDDRK
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccagacatccacactctggcccaccacctgaagcaggagcggctgtacgtg
gcgtcggagaagcagctgatccagaggctcaacagcgatgtgctgaagacagctgagagg
ctctatcgggccgcctggatcgccaagcagcagaggatcaaccttgatcgtctcatcctc
accagtgcggaagcctctccagctgagtgctgccaacatgccaaaatgctggaagacaca
cagtttgttgatggctacaagactctgggtttccaggagacaatctacggtgagttcgtg
gcccggttgagagagaaccccagactggtggcgtcatgcctggtggcaggagagaggctg
aaccaggagcacacccagggggtcatctatacagtcttcacctcactttatggcaactgc
atcatgcaggaggatgagagctacttgctacaggtgttgcggtacctggtagagtttgag
ctgaaggagaatgacaaccctcgccgtctgttgagaaggggaacctgtgccttcagcatc
cttttcaagctcttctctgagggcctgtactcagccaaactcttcctcactgccaccctc
cacgaacccattatgcagctgctggtggaagatgaagaccacctggagacggacccagcc
aaggtgacagagcgtctcactccggcccagcaggagcgctttggagaaaagggctctgag
ggctacaaacaacgggtgcaggcagcggtggaggccaatgaagccaagctggtagctctg
gtcaataagtttattggttacttgaagcagaacacctactgctttccccacagcctgcgc
tggattgtgtcccaaatgtacaagacattgtcctgtgtggagcgtcttgaagtgggtgag
gtgcgcaccatgtgcacagacctactgctgacctgcttcatctgcccagctatagtcaac
ccggagcagtatggtatcatctcagatgcccccatcaatgaagtggcccgcttcaatcta
atgcaggtggggcagcttttgcagcagttggccatggctgacgatgatgcagacccaagg
cggaaaagctgcttgtctaaatttgataagagttgtgtagctgcctttctggacgtggtg
attggtggaagagcagtcgagaccccaccaatgtcctcaatgaatcttctagaaggcctg
agcaggactgcggtctatattacgcatcatcagctgttggcgctggtggactttgtgcga
agcgtgacggcgggtgaccaccttcgggaggaggaccacatggctctggagaccctgctg
gccaatgtgccccagtctcgaactgtgaagagcaacagcctggagctcaccccttccaac
accccccagctctccccagccaccactcccgccaacaagaagaacaggctccccatagga
caacacttagcagctataacatcctgggaccccacaaccaccgctttgtctgctcatatt
ccattagtaaccccttttgcagctgctcgtagccgcagccgtaccaacatagcccaggag
ggggaggcagaggccagctcccaagagtccctgcaggagctgatgccagaggaggtgctg
gtgatttcactaggatttggtcctcagaatgtccctgggatgatgtcagagaatgaggtt
ttgaacctgcagatggctgatggggccccaggggacggccatgctgatgacactaagctg
catggtaaaccagacaaaactctgcgcttctccctctgcagtgacaacttggagggcatc
tcagagggtccatctaatcgttctaactctgtgtcatctctggacctggagggagaatca
gtttctgagctgggagctgggccatcagggagcaacggggtggaggctctacagcttttg
gagcatgaacaggccaccactcaggacaacctggatgataaactgcgcaaatttgagatc
agagacatgatgggcctgacagatgatcgggacatctctgagactgtcagtgaaacttgg
agtactgatgtgctcggcagcgattttgatcccaacatggatgaagaccgtctgcaggaa
atagcaggggcagctgcggagaacatgctcggcagcctgctgtgtcttcctggctcgggc
tcagtgctgctcgacccctatggctccacgatctcggagaccacaagcgaggcctggagt
gtggaggtcctgcccagcgactcagaagcccccgacctgaagcaggaggagcgtctgcag
gagctggagagctgctccggtgttggcagtacctcagatgatacagaagtcagagaggtc
agctcaagacccagcactccaggcctcagtgttgtctcaggtatcagcgcaacctcagaa
gacatccccaacaagatcgaggacctgcggtcagagtgcagctcagactttggaggaaag
gactctgtgaccagtccagatggggaggagtcaggccacggatcacaccatctgacatct
ccaccctcacaagctgattccttattggccatgtttgatcccctctcctccggtgaaggt
tcctgcactggaacaatagtgaggcccaaagtgcactacgccaggccccctcaccctccc
cccgaccctcccatccctgaagccagtgccctggggcaggacacacgccactctctcttc
acgccccactgcttggcccaggctgagctggagcacactaagcagcgccactccttccct
gacaggctggtccgtagccgcagctctgacatcgtgtgcccaggccgccggcccacaagt
gaccccggccttaatcggcgggtagcagtcgaagagcgcgaccctgccggggccttcgca
ttaggaccgtcctcgtcccccagcaaggactccctgaaaggagagactgaggacagaaaa
gacagtgacgatgagaagtctgatcgcaacagaccttggtggaagaaacgttttgtgtca
gccattcccaaagctccgatagcagcatttaggaaaagggacaagcaggagaaagatgat
aatgttccggagcgaatcccgcaagatgaccctttgcccagacagagcacacaagcgcag
gcagctgaagacatcctggacaagtacaggaacataaagaggaccagcccgagtgacgga
gccgcagctggagcttcttacgatggtaccggagatctttgtgttgaggacagcgtgcat
gactctccaagagaagacaccttgcagaacatttccacagatgacctcccagactcagcc
agtcagacagcacagcagcatgactccaagttctctttcagtgatgcaaagaagaagttg
aggttggcgttgtgctccgcagactcagtggctctgcccatcatgacccctgcaaccact
cgaaatgggctgcctgaccacatggaccctgaagacaatgagatcgtctgcttcctgaag
gtccagctagcagaggccatcaatcttcaggataagaaccagatggcccagatccaggag
accacgcgttgcgtcagccgtttcgacgctcgtacctgcagaaagctgctggctgctatc
gcggaggattacagaaagcgggcaccatacatagcctatctaaccaggtgtcgtcagggc
ctgcagacctcacaggcccatctggagagactcctcacgagggtgctgagagataaggaa
gtggcaaaccgctacttcaccactgtctgtgttcggctccttctcgaacacatggagtcc
aagatgctggacttcattaaagcgttccaggggtgcacagcatctgatgacaagaccgca
gcagtggaggattttctgcgctacttgtacggtgccatggcccgtgatgccatttggcag
tatgctagcgaggaccagctgcaggatgcccagatggctatcgagcgcagcgttatgaac
cgcatcttcaaactggctttctacccaaaccaggatggagatattctcagagatcagctt
ttccacgaacacatccagcggctctcaaaagttgtgacggccaatcataaagctcttcaa
atccccgaggtgtacctgaaggagactccatggccctctgcacagtctgagatcaggacc
atcaatgcctacaagactccaagagacaaagtccagtgtatactgcgcatgtgttccacc
atcatgaacctcctcagtctggcaaatgaagactccgttcccggagccgatgactttgtc
cccgtgctcgtctttgtcctcataagggcaaacccgccctgcctgctgtccaccgttcag
tacatcaataatttctacgccagccggctgagtggggaggagtgctattggtggatgcag
ttcaccgcggcggtggaattcattaagaccatcgacgatcgcaagtga
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