Scomber scombrus (Atlantic mackerel): 133978944
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Entry
133978944 CDS
T10651
Symbol
tncb
Name
(RefSeq) tenascin
KO
K06252
tenascin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133978944 (tncb)
04518 Integrin signaling
133978944 (tncb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133978944 (tncb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133978944 (tncb)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133978944 (tncb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_TEN
fn3
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Fn3_Dep-1_2nd
Pur_ac_phosph_N
DUF7949
Fn3_VIN3
Interfer-bind
fn3_2
EGF
Motif
Other DBs
NCBI-GeneID:
133978944
NCBI-ProteinID:
XP_062273288
LinkDB
All DBs
Position
4:complement(3643825..3675504)
Genome browser
AA seq
1692 aa
AA seq
DB search
MGKGFLFSCVTVALLIQLSTAGLVKKVIRHRREALMPKRTQENLTLPDPDQPVVFNHVYN
INVPSTSLCSVDLDSPGGTELKHKNSPMDMQNTEHMEHTVDGDNQIVFTHRINIPKQACG
CNNQLPDIKDILNRLEMLESELSSLREQCGTGAGCCGTQVTGEVTTKPYCNGRGNWSADT
CSCVCEPGWKGPNCTEPECPNDCQDQGRCVDGKCECFEGFGGDDCGIELCLLNCGDYGHC
VEGSCLCEEGFIGEDCSMTNCLNNCLGRGRCEDDECVCDEPWTGFDCSELICPNDCYDRG
RCINGTCYCEEGFTGEDCGELTCPGNCNSRGMCVNGHCVCQTGYSGEDCSKITCPDNCNE
RGHCFNGKCICDPGFEGEDCSILSCPDNCSNRGQCINGECVCDIGYQGEDCSELSCPNNC
QDRGQCVDGQCVCKKGFAGEDCSIKTCPKDCMGRGECVDGKCVCFVGFMGKDCGELTCPN
DCLDRGHCVNGQCVCHKGFTGEDCSEKTCPKNCLDRGYCVDGNCVCYEGFTGPDCSILTC
PGDCQNQGRCENGACVCDEGFIGEDCSEVSPPKDLTVVVVTPETVDVSWENEMRVTEYLV
TYMPTATGGLELDMRVPGDQKMATIRELEPGVEYLISVYAVLNNKKSVPVSARVSTHLPE
PEGLKFKSVRETSVEVQWDPLDIPFDGWNLIFRNTKEEDGEILNSLGRPETTFEQSGLGP
GQEYEVKLEVVKNNKRGPPASKNVITRIDAPSQMDVRDVTDTTALVTWFQPVAEVDGVTV
SYGPSSSPADRKVVELSSTDTQYHLGGLAPDTQYEISLTARKGGLTSIPVYESFLTDLDA
PRDLQTVELTDESITLEWKNSLARVDNYRIKYGPLSGGEHGELLFPPGPKDTTQAKITGL
RPGTEYGMGVTAVKDERESLPTTTNAVTALDAPKDLTVTEVTETTMILEWTRPLAKLDSY
RLVYVSADGHRAEDVVPGSSEAHTLRGLTPGMLYTISIIAERGRRTSAPATISAPTEEEK
PMVTNVTISEVTWDSLILSWSADDGVFEAFLIEVSDAESGTEWQNHTVAADARSLTIFGL
MPSTWYRANLYGMYKGALLDPVFADTITETEPEVQALLVSDITPESFKLAWVAEEDTFDT
FVIMVSESEGTGQPRELVLGEEERNAEMTELTEDTEYNIEIFGIVLGRRSKSVKERVITD
LGSPKGIRFSDVTDTSATVHWVVSRARVDSYRVTYVPAHGGNAKTLTVDGSESQIMLPNL
TPGVTYEVTVVALKGQRESEPGSDSVTTALDKPRGLTAINITDTEALLLWQPAIATVDGY
VITYSADSVAPVMERVSGNVVEFEMGSLTPATHYTVKVYAVRDLAKSAATTTEFTTDVDA
PQDLAASNIQTETGMLTWRPPRADITGYILSFESADGTVREVVLSPTAVSYNMVQLSAST
EYSVKLQAIAGPKRSRVITTVFTTTGVLYRHPRDCSQALLNGDTSSGLYTIYLTGDESQP
IQVYCDMSTDGGGWIIFLRRQSGKLEFFRNWKNYTGGFGDMNDEFWLGLSNLHKITAGGQ
YELRVDLRDKGETAYAQYDKFSISEPRTRYKVHVGGYSGTAGDSMTYHHGRPFSTYDHDN
DIAVTNCALSYKGAFWYKNCHRVNLMGRYGDNSHSKGVNWFHWKGHEHSIEFAEMKIRPS
NFRNLEGRRKRS
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaggctttctcttcagctgcgtgaccgtggctttgctcattcagctgtccacc
gctggcctggtcaagaaggtgatccgccaccgcagagaggctctgatgcctaagagaacc
caagagaacctcacactgcccgaccctgaccagccggttgtgtttaatcatgtctacaac
atcaacgtaccctctacgtctctctgctccgtggacctcgactcacctggaggcaccgag
ctcaaacacaagaacagcccgatggacatgcagaacaccgagcatatggagcacacggtg
gatggtgacaatcagatcgttttcacccaccgcatcaatatccccaagcaggcgtgtggc
tgtaacaaccagctgccagacatcaaagatatcctgaacaggctggagatgctggagtca
gagctgtctagtctgagagagcagtgcggcactggggcaggctgctgtgggactcaagtt
acaggtgaagtgaccacaaagccctattgtaatggccgtgggaactggagtgctgacacc
tgcagctgtgtatgcgagcctggatggaagggccccaactgcaccgaacctgagtgcccc
aacgactgccaggaccagggccgctgtgtggatggaaaatgtgaatgctttgagggcttt
ggtggagacgactgcggtattgagctttgcctgctgaactgcggcgactatggccactgt
gtcgaagggtcctgcctctgtgaggagggcttcatcggtgaggactgctccatgaccaat
tgcctcaacaactgcctaggccgtggacgttgtgaggacgatgagtgtgtttgcgacgag
ccttggacaggctttgactgctccgaactcatctgtccaaatgactgctacgaccgtgga
cgctgtatcaatggtacctgctactgtgaggaaggcttcactggagaagactgtggcgag
ctcacttgtcctggcaactgtaacagccgtggcatgtgtgtgaatggccactgtgtgtgt
cagaccggctacagtggagaggactgctcgaagatcacttgtcccgacaactgcaacgag
agaggccattgcttcaatggaaagtgcatctgtgatccaggatttgagggtgaagattgc
tccattctctcatgccccgacaactgcagcaacaggggccagtgcatcaacggagaatgt
gtatgtgacataggataccaaggtgaggactgtagcgagctctcctgccccaacaattgc
caagaccgtggtcaatgcgttgatgggcagtgcgtatgcaaaaaaggctttgccggggag
gactgcagcatcaagacctgtccaaaagactgcatgggacgtggggagtgtgtggacggc
aaatgtgtttgcttcgtcggcttcatgggtaaagactgcggcgagctcacctgccccaat
gactgtctggaccgtggccactgcgtcaacgggcaatgtgtttgtcataaaggtttcact
ggtgaggactgcagtgagaagacgtgtcccaaaaactgtctcgacagaggttactgtgtc
gatggcaactgtgtgtgctatgaaggtttcaccgggccagactgctccatactgacctgc
ccaggggactgccagaaccagggacgctgtgagaatggagcgtgtgtctgtgatgagggc
ttcattggggaggactgctctgaggtatcaccacccaaagacctaacggtggtagtggtc
accccagagacggtggatgtctcctgggagaatgagatgcgtgtaacagagtatctggtc
acctacatgcccacggccactggaggtctggagctggacatgcgggtgcctggggaccag
aagatggccactattcgggagcttgaacctggtgtggagtacctgataagcgtctatgct
gttctcaacaacaagaagagcgttcctgtcagtgctagagtgtcaacacatcttcctgag
cctgagggactcaagttcaagtcagttcgggagacatcagtggaggtgcagtgggaccca
ttggacattccctttgatggctggaacctcatcttcagaaacactaaagaggaggatggt
gagattcttaactccctcggccgtcccgagaccacctttgagcagtcaggcctggggccc
ggccaggagtacgaggtcaaactggaggtggtgaagaacaacaagcgtggaccgcctgcc
tccaagaacgtcatcacaaggattgatgcccccagccagatggatgtacgtgatgtgacc
gacaccactgcactggtgacctggttccagcctgtggccgaggtggacggggtcaccgtc
tcgtacgggcccagttccagccctgctgatcgcaaggtggttgagctgtcctctactgac
acccaataccacctgggaggccttgcccctgacacccagtacgagatatctctgacggct
cggaagggaggactgaccagcattcctgtttacgagtcattcctcacagacctggatgct
ccaagagacctgcagacagttgagctgacagacgagagtatcactcttgagtggaaaaac
agcctggctcgggtggacaactaccgcatcaagtacggacctctgtctggaggcgagcat
ggagagctgcttttccccccgggacccaaagacactacacaggccaagatcactggcctg
agacctggcacagagtacgggatgggagtgacagcagtgaaggatgaacgggagagtctg
ccgacgaccaccaacgcagtgactgccctggatgctcccaaggacttgaccgttacagag
gtgacagagaccaccatgatcctggagtggacgcgccccctggccaaactggactcctac
agactggtctatgtttcagctgacggccacagggctgaggacgttgtcccaggcagctcc
gaggctcacaccctgaggggcctgacacccggcatgctgtacaccatcagcatcatcgca
gagagaggccgcaggaccagtgcgccagccaccatctcagcacccacagaggaggagaaa
cccatggtgaccaacgtcaccatcagcgaagttacgtgggacagcctcatcctgtcctgg
tctgctgacgatggggtgttcgaggcctttttgatcgaggtttccgatgcagagtcgggc
actgagtggcaaaaccacacggtggccgccgatgcacgcagcctcaccatctttggcctc
atgccctccacctggtacagagccaatctgtacgggatgtacaagggcgccctcttagac
cctgtctttgcagacactatcacagagaccgaaccagaggtgcaggctctccttgtctcc
gacatcacccctgagagctttaagctggcctgggtggctgaagaggacactttcgacaca
ttcgttataatggtcagcgagtccgagggcacaggccagccacgagagctggtgctgggc
gaagaggagcgaaacgcagagatgacagagctcactgaggacacggagtacaatattgaa
atctttgggatcgttttgggaagacgctccaagtctgtaaaggagcgggtgataacagac
ctgggttcacccaagggcatccgcttctctgatgtcactgacacgtccgccactgttcac
tgggtggtttcaagagctcgggtggacagctaccgggtcacttatgtgcctgctcatgga
ggaaatgctaagactctgaccgtggatggctctgagtctcagattatgttgcccaacctg
acgcccggggtcacctacgaggtcactgtcgttgctctcaagggtcaaagggagagcgag
cccgggtctgacagcgtcaccacagctctggataaaccccgcggtctgactgcaatcaac
atcactgacactgaagctctgttgctctggcagcccgccatcgctactgttgatggctac
gtcatcacctacagtgcagactcagtggctccagtgatggagcgtgtgtcaggaaacgtg
gtggagtttgagatgggctctctgacgccagccacgcattacaccgtgaaggtctacgca
gtgagggacttggccaagagcgcagccactaccactgagtttaccaccgatgtggacgcc
cctcaggacctggcagccagtaacatccagacggagaccggcatgctgacctggaggccg
cctcgcgctgacatcaccgggtacatcctcagctttgagtcggcagacggcaccgtccgg
gaggtggtcttgagtcccactgctgtctcttataacatggttcagctcagcgcctccaca
gagtactcagtcaagctgcaagccattgctggtcccaagagaagcagagtcatcaccact
gtcttcaccaccactggtgtgttgtacagacaccctagggactgctcccaggccctgttg
aatggcgatacctcatcaggtctgtacaccatctatctgactggagatgagagccagccc
atccaggtctactgcgacatgagcaccgatggaggcggatggatcattttcctcagacgc
cagagtggaaaactggagttcttccgcaactggaagaattacaccgggggcttcggggac
atgaatgatgaattctggctgggtctgtccaacctgcataagatcacagccggaggtcag
tatgagctgcgagtcgacctgagagataagggagaaacagcctacgctcagtacgacaag
ttctccatctctgaacctcggacacgttacaaggttcatgtaggaggatacagtggaaca
gcaggtgactcaatgacctaccaccacggtcgtccattctccacttatgaccacgacaat
gacatcgctgtcaccaactgtgccctgtcctataagggcgcattctggtataaaaactgc
caccgtgtcaacctcatgggacgatatggagataacagtcacagcaagggtgtcaactgg
ttccactggaaaggccacgagcactcgattgagtttgccgagatgaagattagaccatct
aacttcagaaacctggagggaaggaggaaacgatcataa
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integrated database retrieval system
