Scomber scombrus (Atlantic mackerel): 133979120
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Entry
133979120 CDS
T10651
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04142
Lysosome
Brite
Membrane trafficking [BR:
ssco04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
133979120
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
133979120
RAVE complex
133979120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
EIF3I
Beta-prop_WDR75_1st
PEP5_VPS11_N
Beta-prop_CAF1B_HIR1
Beta-prop_EML
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_IP5PC_F
Beta-prop_Vps41
Beta-prop_DCAF12
Beta-prop_WDR19_2nd
Motif
Other DBs
NCBI-GeneID:
133979120
NCBI-ProteinID:
XP_062273545
LinkDB
All DBs
Position
4:complement(21666826..21725815)
Genome browser
AA seq
3120 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGSVNNVPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV
GCVDCSLQGGQIAASYGSTVCVFEPVQHPDQKDTSLTKLNYQWQKTGQFVLQSMVRNLAW
HPTGSTLLTGSSSLKLWSNVDGVKDEAEEEGKQAEMTTRDFQSSWSCIWQSKTASPVSLM
KFSPDGEFFATAGQDDCLVKVWYSTSKWKCGVSRLYTPPECNISVQGELAFSFVYLAHPR
SVTGFSWRKTSKYMPRGSVCNVLLTCCKDSVCRLWAETLLPGDSLLSGHHNNHTGGQHSE
TLRCAGPSRKNNCNGKTQGRTTQELNFQELWHSPFYRDLPQPSLTGCLPHHQSRHYNHKK
ISSHMPHANALCHFHIAASINPATDIPLLPSISSLSAVDDEEPGGPFTVHWLNNKELQFT
LAMEVFLQQLRGSLEQQSECSHEEPENEDNFDEDNHSSRPSDPQGPEAAELPLAAVEHQV
DVLLEEWNKGADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQAQVSFVSRIPVAFPTGDA
ISLSHSVVMYACNKNVDLAIQHGRQRPPGSTLPQTKSALISYGGQGKAAPSSSLRLSIFT
PNVLMISKHADGSLNQWAVSFAEDSAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLT
TSHHNALRSPEADSILAPPEACSTGFFHSTSLPGGSRRSRVSLGMISQDPNAIYSELILW
RVDPVGPLSLSGGVSELARINSLHASAFANVAWLPTLIPSSCLGVYCNSPSACFVASDGY
SLRLYQAVIEAKKLLSEVSNPEISKYVGEVFNIISQQSTAKPGCIIELDAITDFQGKETQ
LLHVFEEDLILGNERTESTQEIPDSSHGASSEPTFSARFFLVVVELTPTGRSLLHMWHLH
LAARPVTMEDTTSEKDTSTGSSMNSSQFNFETFSSPVTQKSKPCTSNLQSACRLSLTTHR
LYSQEIALPAGVEAISVTPSAGHLSASCSLPTGRVPYLLATSCSDGKVRFWRCNVMETEH
SGLDKLMYQWEEWPLLVEEGIPNCSAVNVQGRPIEVSCCHTGRIAVAYRQTPNTSPNLTP
PLNSHGLTSPPTLASSPYVQHNNNTTNTHLTPTLTIQLSSNLSPRPLPANTREPLVHIGI
FQCESTGGSQWILEQTIVLDNTDPTASYSISNSTTGNTNIPGSNMDFSIPNEHCLGSTSK
SLVHLDWVSQEDGSHVLTVGIGTKIYMYGRLSGKPPELGLSCDASRDQRLSRLVLLRSVD
LVSSVEGSLPIPVSLSWVRDGILVVGMDCEMHVYSQWQPPAPPKPNVAIVQDTDISSSVS
SIISAVRQSQEEGPSLGAPMSLLAPPKKALTRSMMSLAQKLSGKRTAYDLPVEMEDSGLF
EAAHQLFPTLPQYHPVQLLELMDLGKVHRAKAILSHLVKCIAGEIVALKDTSTNSEKRVR
SRTISAGGSTARDRKMFSKAENSTPDYTEISSIPPLPLYALLAADEDTSPKPEKVGSVSG
DSGHGSSHTDAYDELFHTPSIADLDPMDKDQEETGNKVIDLSQYSPTYFGPEHAQVLSSQ
LLHSSLPGLTRMEQMSLMALADTIATTSTDLKDSQGKSKGGETLDECGLKFLLAVRLHTF
LSTSLPPAHRAQLLRQGLSTCHYAWAFHSEAEEELLNMLPALQKGEPTWPELRSMGVGWW
LRSTNKLRRCIEKVAKSSFQRNNDPLDAAIFYLALKKKAVVWGLYRSQKNAKMTDFFRNN
FSEDRWRKAALKNAFSLLGKQRFQHSAAFFLLAGSLKDAVEVCLEKMQDLQLALVISRLY
ESEFETASTYKKILQRHVLGQDKQIPAHHDPFLRSMAHWVLEDYSRALDTLLEQPAVSAN
SVSPESRSDTGSSSLSTCNPEVFNFYTYLRTHPLLLRRHFGSSDKAKVGLTAEGRRADSI
SLEERRLFFTAAYAHLQAGCPMLALEVLSKMPKVHKHSKLHNQEDTGIATELSVGSKNGQ
TSDPDWSQPALNGYESGGDSLSNSHSDSVLSFDWSQPSVTLPDETLELKWDSDKDVDEDD
EDEEETKNGKSGITADSSSVFQDTQDAMSPLMEMVTGEDSSDFIAPADDILVAQLKFTAC
LKIVTNELRTLSTGYELDGGKLRYQLYQWLEREVVALQHCCNYKPCLPELSVQGDAPVSG
LVEEEQPGSPRGDSQRSRRHWLQSNQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQES
HQDDSIQPVMTQCSQPTSIPLLMACTANVKTVVANPIVYLTNLTHDILQTINALDSPPHP
DVVNNEIYVMHTLAASLSACIYQCLCDGHTYSHVNHFTGIVYQSVLLSQKQPVRTVSMDE
SVQPNTSPAQWPGIASLIRLLSSAGEESQPGLAVLLCEIMTAVFLSLFVHGMATHSSNEL
FRIVAHPLNSKLWVTVFGGGARTPVIQKPNSPTKTPPPASPGIDSSERKSRRFRLLSSRS
GSKEESGIEREGPSSPKPGPVVEQEAASIFKERFVPPELSIWDYFIAKPLLPPSESRIEY
DSEESEGSQDEDEDDDEYEDVFDPNSPQREHSNHNSYSWCLMRLAMVQLALVNLKSFYPM
AGYDLLDLPVGSPLCHAVLKTLQRWEQVLQKRLEVFGGPPSKYISTHLQDETATPGPALL
RHKALLEPSNTPFRTSHHSALPVKRLWQFLVKQEEVQETFIRNIFTKKRDPNESVEDQTD
NMKCSGMDETGNYQTESDLSSSGGKARIIHKESDIITAFAINKANRNCLVMASTHDIQEL
DVSSILATQILTWIDDDEAEAKSVGSDDFLVVHARDDFAALHGTTPYTHSTPGTPINMPW
LGGLQTGRGASVMIKRNINNVRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQIICFRSPG
NSRVTRIRFNHQGNKFGIVDADGGLSLWQTNTSGNAPKPYLTLQCHNKTAHDFVFVGSSS
LIATAGLSTDNRNVCLWDTLVTPANSLVHAFCCHESGATVLAMAPRQQLLITGGKKGWIS
VLELAHRHQRQSFQAHDSPVKALAVDPTEDCFISGSAEGNIKVWNLATQCPLYTFPNEHA
RQSLFRNLGTGVMQIEVGPANHIFSCGADGTMKMRILPNRFSVVNNNNNGNMKNDVKFII
NT seq
9363 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccatcaggtcctcactggggctgtcaaccctggggacaattgtttctctgta
gggagcgtcaacaacgtgccattcacggcctatgcgtctggttgtgatgtggtgattctg
ggcagtgactttgagcgactgcagatcatcccaggggccaaacatggcaatatccaggtc
ggctgtgtcgactgctcactgcagggaggacagattgcagcttcctatggaagcactgtg
tgtgtttttgagccagttcagcacccagatcaaaaggacacatctttgactaagttgaat
taccaatggcagaagactggccagtttgttttgcagtctatggtacggaacctggcctgg
caccccacaggcagcactctcttaacaggctctagtagcctgaagttgtggtctaatgtt
gatggagtgaaggatgaagctgaagaagaaggaaagcaagcagaaatgaccacaagagac
ttccagtcttcatggagttgcatctggcagagcaagacggcctctccagtcagtttgatg
aagttctctcctgatggggaattttttgctactgctggacaggatgactgcctagtaaag
gtttggtacagcaccagtaagtggaagtgtggtgtttccagactttatacacctccagaa
tgcaatatcagtgtccagggagagctggccttttcctttgtctacctggcccatccccgc
tctgttactggcttttcttggaggaagaccagcaagtacatgccacgaggttcagtgtgt
aatgttttgctcacctgctgtaaggacagcgtgtgtcgcctctgggcagagactctgttg
ccaggtgacagcctcctgtctggtcaccataacaaccacactggtggccaacacagcgaa
acactgagatgtgctggcccctctaggaaaaacaactgcaatgggaagactcaagggaga
acaacacaagaattgaattttcaggaattatggcactcccccttttatcgggatttgcca
cagccctctttgactggctgcctgccccaccatcagagccgacactacaaccacaagaag
atcagcagccacatgccccatgccaacgctctctgccacttccacattgctgccagcatc
aaccctgccacagacattcctctgcttccctccatctcctctctgagtgctgtggatgat
gaggaacctggaggcccctttactgtccactggctcaacaacaaagagcttcagttcact
ttagctatggaagtcttcctgcagcagctccgaggcagcctggagcaacagagtgaatgc
tctcatgaagagcctgaaaatgaggataactttgatgaagacaatcatagtagcaggcca
agtgacccccaaggacctgaggctgcagagcttcctttggcagcagtggagcaccaggtg
gatgtgttgttagaagagtggaataaaggggcagacatgttattcagcatccatcccatg
gacggctccctgttagtctggcatgtggactggttggatgaataccagccaggcatgttc
agacaagctcaggtgtcgtttgtgtcccgtatccctgtagcatttcctacaggtgatgct
atctccttgagccacagtgtggttatgtatgcctgcaacaagaatgtggatctggctatc
caacatggcagacagcgaccacctgggagcacgttgcctcaaaccaaatctgctcttatt
agctacggaggtcaagggaaagctgcacccagcagtagtcttcgactaagtatttttacc
cccaatgtgcttatgatctctaaacatgccgatggctctctgaaccagtgggcagtcagc
tttgcagaggactctgctttctccacagtgctcagcgtttcacacaagtctcgctactgc
ggtcaccgcttccacctcaatgacctagcctgtcattccttactccctctcctcctcacc
acctcacaccacaacgccttgaggtcgccggaggcagacagtatcctggctcctccagag
gcctgctccactggtttctttcattcaacttctctgcctggtggatcacggcgcagccga
gtgtccctgggtatgatttcccaggatcccaatgctatctacagtgagctgattttatgg
cgagtggaccctgtggggccgctgtctctgtcaggtggagtgtctgagttagctcgcatc
aattctcttcatgcatcagcatttgctaatgtagcctggctgccaacgctcatccccagc
agctgtttaggtgtgtactgtaactctcccagcgcctgctttgtggcaagtgacggctac
tcccttagactatatcaggctgttattgaagccaagaaactcctaagtgaggtctccaat
cctgagatatctaaatatgttggagaggtgttcaacatcatcagtcagcaatccacagca
aaaccagggtgtattatagagctggatgccattactgactttcaggggaaggagacccag
ctcctgcatgtttttgaggaggatctcatccttggcaatgagagaacagagagcacacag
gaaattcctgattcttctcatggtgcctctagtgagccaaccttctcggcacgttttttt
ctcgtggtggtcgaattaactccgactgggcgctcgctcctccacatgtggcatctccat
cttgctgctagacccgtcacaatggaggacactacatcagagaaggataccagcacaggt
tcttcgatgaacagctctcagtttaattttgagacgttcagttccccagtcactcagaag
agtaaaccctgcacttccaacctgcagagcgcctgtcgtctcagcctcacaacacacagg
ctgtacagccaagagattgctctgccagcaggagtggaggccatcagtgttacaccctca
gcaggtcatctcagcgcatcgtgttctctgccaactggccgtgtgccttacctccttgct
acttcctgctctgatggaaaggtgcgcttctggaggtgcaatgtcatggagacagagcac
tccggtttggacaagttgatgtatcaatgggaagagtggcctcttctggtggaggagggc
attcccaattgcagtgcagtaaacgtgcaaggtcgcccgatagaggtcagctgctgtcac
actggacggattgcagttgcctacaggcagacaccaaacacatctcccaacttgacgccc
cctctgaactctcacggtctgacttctccacctaccctggcttcctccccttatgtgcag
cacaacaacaacactaccaacacccacctgaccccaacccttactatacagcttagctca
aatctctctccaagacctctcccagcaaatactagagaaccactggtccacattggtatc
ttccagtgtgagtccactggcggttcgcagtggattctagagcagaccatagtcctggac
aacacagatcccacagctagctatagcattagcaatagcacaactggaaataccaatatt
ccaggcagtaacatggacttctctatacctaacgagcactgtcttggttctactagtaag
agcctggttcacttggactgggtctcccaagaggatggatcacatgttcttactgttggt
attgggacaaagatttatatgtacggccgcctatctggaaaacctccagaacttggcctg
tcatgtgatgctagtagggaccaacgcttatcgcgtctggttctgcttcgatcagttgat
ctggtctcctctgttgaaggttcattacccatcccagtctccctgtcctgggtacgagat
ggcatcttagtagtaggcatggactgtgagatgcatgtctactcccagtggcagcctcca
gcaccacccaaacccaatgttgccattgtccaagatacagacatcagcagcagtgtctcc
tccattatatccgctgtcagacagagccaggaggaggggcctagtcttggggctcccatg
tctttactggcacctcccaaaaaggccctgacaagatcaatgatgagcttggctcagaaa
ctcagtgggaagagaacagcatatgacctgccggtagagatggaggattctggactcttt
gaagcagctcaccaactctttcccaccctgccccagtaccacccagtacagttactggag
ctcatggatctggggaaggttcaccgtgccaaagccatcctctcccacttggtgaaatgc
attgctggagaaattgtggctcttaaagacacctccaccaactcagagaaacgtgtacgt
tctcgaaccatcagcgccggaggaagcacagccagggaccggaagatgttcagcaaagca
gagaactccaccccagactacacagagatcagctccatccctcctctgcctctctacgcc
cttctggcagctgatgaggacacatcaccaaagcctgaaaaagtgggcagtgtgagcggt
gatagtgggcatggttccagtcacacagatgcttatgatgagctatttcatacacccagc
attgcggacttggaccccatggacaaagatcaagaggaaactgggaacaaggtaatagac
ctgtcccagtacagtcctacatactttggtccagaacatgcccaagtcctgtccagccaa
cttcttcactcaagtttgcctggtttaactcgtatggagcaaatgtctctcatggctctg
gctgacaccattgctaccaccagcacagacctcaaggacagccagggcaagagcaaaggt
ggagagacactggatgaatgtggtctgaagttcttgctggctgtgagactacataccttc
ctctctacgtccctccccccggcacaccgagcacaactgctacggcaaggcctgtcaaca
tgtcattatgcctgggccttccactctgaagctgaagaggagttactcaacatgttgccc
gccctgcagaagggagagccaacctggcctgagctgcgctccatgggtgtcggctggtgg
ctgcgcagcaccaacaagctacgcaggtgtattgagaaggttgccaagtcttcttttcag
agaaataatgatcctctggatgcagctatattttacctcgcattgaagaagaaagcagtg
gtctggggactgtacagatctcagaagaatgccaaaatgacagactttttccgcaacaac
ttcagcgaagaccggtggaggaaagcagcattgaaaaatgccttttctctgttgggaaag
cagcggttccagcattctgcagccttcttccttctagccggctcccttaaggatgctgtt
gaggtgtgtttagagaaaatgcaggacctacagcttgccctggtgatctccagattgtat
gagtctgagtttgagacagcatccacctacaaaaagatcctccagagacatgtgctggga
caagacaaacagattccagcccaccacgatccgttcctacggagcatggctcactgggtc
ctggaggactacagcagagcattggacactttgctcgagcagcctgctgtcagcgctaac
tctgtgtcccccgagagcagatctgatactggctcctcttccttgtctacatgtaatcct
gaggttttcaacttctatacctacctccgtacccacccgctcctccttcgtcgccacttt
ggctcctcagacaaggctaaagttggcctgaccgctgagggtcgcagggctgactccatt
agcctggaggagagaagactgtttttcacagctgcatatgcacacctgcaagctggctgc
ccgatgctagcactcgaagtcctctccaagatgcccaaagtccacaagcattccaaactc
cacaaccaggaggatacgggtatcgccactgaactcagtgttgggagtaagaatggacaa
acatcagacccggactggtctcagccagctcttaacggctacgagtcaggcggggacagc
ttatccaacagccactcagattcagtgttgagttttgactggagccagccgtcagtgaca
ctcccagatgagaccctggagttgaagtgggacagtgacaaagacgttgatgaggacgat
gaggatgaagaagaaactaaaaatggtaagagtggcataacagcagacagcagcagtgtg
ttccaggacacgcaggatgccatgtcgccactaatggagatggtgacaggggaggacagc
agtgacttcatcgcaccagcggatgacatcctggtagcccagctgaagtttacggcctgt
ttgaagattgtgaccaatgagctgaggacgctttcgacagggtatgaactggatggagga
aagcttcgttatcagctctaccagtggttagaaagagaggtggtggctctccagcactgc
tgcaactacaagccttgcctgccagagctgtcagtccagggtgatgcccctgtctctggg
ttggtggaggaggaacagcctggcagcccacgtggtgacagccagaggagcaggagacac
tggctgcagagtaaccagcccttactgaggatgtttctgagctactgcagcttacacggc
tcccacggtggaggactggcttctgtacgcatggagctcatattattgcttcaggagtct
caccaggacgactccatccaaccagtgatgacgcagtgttcccagcccacatctatccct
cttctgatggcttgcacagccaacgtaaagaccgtggtggccaatcccatcgtatacctg
accaacctgactcacgacatcttacagaccatcaatgcactcgactctcctccacatcct
gatgttgttaacaatgagatctacgtgatgcacacattggctgcctctttgtctgcttgt
atatatcagtgtctgtgtgatggacacacatacagccatgtgaaccatttcacagggatt
gtatatcagagtgtgttgctgtcccagaagcagccagtcagaacagtcagcatggatgag
tctgttcagcccaacacctctccagcacagtggccaggtatcgcctctctgattcgtctg
ttgagctcagcaggtgaggagagtcaaccgggcttagccgtgctgctctgtgagatcatg
actgcagtcttcctcagtctgttcgttcacggcatggccactcactccagcaatgagctg
tttcgcattgtggcccaccccctcaacagcaaactttgggtgacggtgttcggaggaggt
gcccggacccctgtcatacagaaacccaacagcccaacaaaaacacccccgccagcctca
ccaggcatcgacagctcagaaaggaaatcgagacgattcaggctcctgtcatcacgcagt
ggatcaaaggaagagtctgggatagagagggagggcccgtccagtccaaagccaggacct
gttgtggaacaggaagctgcctccatctttaaagaacgttttgtccctccagagctcagc
atttgggattactttatcgccaagccgttgctgccaccatctgaaagcagaattgagtac
gactcagaggagagcgagggcagtcaagatgaggatgaagatgatgatgaatatgaggat
gtgtttgaccccaattctccacaaagagagcattctaaccacaattcatacagttggtgt
ttaatgcgcctggcaatggttcagctcgcgctggtcaacctcaagtctttctaccccatg
gcaggatatgatctcttagatctgcctgtgggctctcctctgtgtcacgctgtgctgaag
acgctgcagcgctgggagcaggtgctgcagaagaggctggaggtcttcgggggccccccc
tccaagtatatctccacgcacctgcaggatgaaacagccacacctggccccgccctcctc
agacacaaggccctgttggaaccatccaacacacctttcaggacgagccaccattcagcg
ctgccagtgaagcgattgtggcagtttctggtcaagcaggaggaagtacaggagactttc
attagaaacatcttcaccaagaaacgggacccaaacgagtcggtcgaggaccagactgac
aatatgaaatgttcagggatggacgagacaggaaactatcagactgagtcagatctaagc
agctccggaggaaaggcacgcatcatccacaaggaatctgacatcatcacagcttttgcc
atcaacaaggcaaatcgtaattgtttagtcatggcctccacccatgacattcaggagttg
gatgtgtcatccatcttggccacacagatcttgacatggatcgatgatgatgaggctgaa
gccaaaagtgttggcagtgatgacttcttggtggttcacgcacgtgatgactttgccgcc
ctccacggcaccacgccgtacactcacagtactcccggcacacccatcaacatgccgtgg
ctgggaggcctgcagacaggccgcggtgcatctgtgatgatcaagagaaacatcaacaat
gtgagaagaatgacctcccatcccacactgccgtactatctgacgggagctcaggatgga
agcgtgaggatgttcgagtggggtcattcccagcagatcatctgtttcagaagccctggg
aactccagagtcaccagaatacgattcaaccaccaaggaaacaagtttggtatcgtagat
gctgatggaggtttgagtctctggcagacaaacacaagtgggaatgcaccaaaaccttac
ctgacattgcagtgccacaacaagacagctcatgactttgtctttgtgggctcctcctcc
ctcattgctactgcgggcctttcaacagacaacaggaacgtgtgtctgtgggacactctg
gtgactcctgctaacagtcttgttcatgctttctgctgccatgagtcaggtgctaccgtg
ctcgcaatggcccccaggcagcaactgctcatcacaggtggaaagaagggctggatcagt
gtcctggagcttgcccacaggcaccaacgccagagcttccaggcccacgactcaccggtc
aaagcactggctgtcgatccgactgaggattgctttatcagtggatcagctgaaggcaac
attaaggtttggaacttggccacacagtgtccactctacaccttcccgaatgaacacgct
cgccagtcgctgttcaggaacctcggcacgggtgtcatgcagatcgaggtgggaccggcc
aatcacatcttctcctgtggcgccgacgggaccatgaagatgaggatcctccccaaccgc
ttcagtgttgtcaataacaacaacaacggcaacatgaagaacgacgtcaagttcatcata
tag
DBGET
integrated database retrieval system
