Scomber scombrus (Atlantic mackerel): 133979332
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Entry
133979332 CDS
T10651
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03030
DNA replication
ssco03410
Base excision repair
ssco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133979332 (pole)
03410 Base excision repair
133979332 (pole)
03420 Nucleotide excision repair
133979332 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssco03032
]
133979332 (pole)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133979332 (pole)
Enzymes [BR:
ssco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
133979332 (pole)
DNA replication proteins [BR:
ssco03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
133979332 (pole)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
133979332 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
zf-RRPl_C4
Motif
Other DBs
NCBI-GeneID:
133979332
NCBI-ProteinID:
XP_062273831
LinkDB
All DBs
Position
4:complement(15471240..15486676)
Genome browser
AA seq
2262 aa
AA seq
DB search
MSALKRLERSQFTDEMDSRFSFDRMKEPGEKTGWLINMHPTEILDEDKRMISAVDYYFIQ
EDGSRFKVALPYKPYFYIATKKNCEREVISYLSKKFQGKVSKLETLPKEDLDLPNHLVGL
KRNYIKLSFNTVDDLIKVKREISPAVRKNREREQSNDAYTSMLSSALSGGNVASADEDAM
LKSISDQLDNIVDMREYDVPYHVRLSIDLKIHVAHWYNVRYRGSAFPPEIVRRDDLVERP
DPVVLAFDIETTKLPLKFPDAESDQIMMMSYMIDGQGFLITNREIVSEDIEDFEFTPKPE
YEGPFTIFNEDDEAALLQRWFDHIHETKPNIFVTYNGDFFDWPFVETRAALHGLSMYKEI
GFQKDSQGEYKSSQAIHMDCYRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEMCRM
ATEEPQTLATYSVSDAVATYYLYLKYVHPFIFALCTIIPMEPDEVLRKGSGTLCEALLMV
QAFHANIIFPNKQEQVFNKLTDDGHVMDSETYVGGHVEALESGVFRSDIPCRFKMNPAAF
DFLFQRVERTMRHAIEEEEKIPLEQVTNFNEVCDEIKQKLTSLKEVPNRIECPLIYHLDV
GAMYPNIILTNRLQPSAMVDEATCAACDFNKPGATCQRRMAWQWRGEIMPASRSEFHRIQ
QQLESEKFPPFFPNGPPRAFHTLNREEQAKHEKKRLADYCKRAYKKTHVTRLEERVTTIC
QRENSFYVDTVRAFRDRRYDFKGLHKVWKKKLSAAHESGDAAEVKRCKNMEILYESLQLA
HKCILNSFYGYVMRKGARWYSMEMAGIVCYTGANIITQARELIEQIGRPLELDTDGIWCV
LPNTFPENFVMKTSNEKKPKVTISYPGAMLNILVKEGFTNDQYHELVDPASLTYNTRSEN
SIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQLIKIFQS
SVFEAFLKGTTLEEVYASVSKVADYWLDVLYSKAANMPDAELFELISENRSMSKRLEDYG
EQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVISRKPEGSPVTERAIPLAIFQAEPSVKK
HFLRKWLKMPSLHELDIRTILDWGYYIERLGSAIQKIITIPAALQQVKNPVPRVRHPDWL
HKKLLEKNDIYKQKKISELFTSEGKRQVAHQPLEGGQTADIEDFGMPARPLQPAILISTK
RKRASQGGDSQVESQDVELTQSWREILGPPPPMGKTKEERLVWLRYHKKKWELQLRQRKE
RKKRRRLLDGEAQPVGGGVIRDGPTTGLGSFLRRTARSILDMPWQIVQIAETSHPGLYKL
WAVIGNDLHCMKLNIPRVFYVNQKVPKQEEGATYKKVNRMLPRSNMVYYLYEYCVPEDMY
QEHINEINADLSAPDIEGVYETQVPLLFRALVQLGCVCMVNKHVVRDLAGREADTFDLEH
LEMRSLAQFSYLEPGSVRHMYLYHHSQGHKALFGLFIPSQRKASIFVLDTVRSNQMPNLS
NLYTAERTALLEKMTEELLPPEKHNFEVRAENDVKAIYRALQRILLNYKEERRGPTLIAV
QSNWELRRLAAGMPVLEEFPVVPVHVIDEISYNVLDWQRHGARRMVRHYLNLDSCLSQAF
DMARYYHLPVGNLPQDVSIFGSDLFLARHLRKHNHLLWLSPTARPDLGGKEADDSRLVME
SDDRCSVEINAQGCYSTVCVELDVQSLAVNTILQSQHVNDMEGGSSMGVSFDVIQQASLE
DMMSGNQGASSLASYDETALCSNTFRILKSMVVGWVREITQYHNVYADNQVMHFYRWLRS
PSSLLYDPALHRTLHNMMKKVFLQLVAEFKRLGSTVVYGNFNRIILCTKKRRIDDAIGYV
EYITNSIHSREIFHSLSISFSRCWEFMLWMDLANYGGVKGRLPSSVLYGEDGAKQKKENR
EEGGEDGSEDEDEDEANVEEDDGETDEVEELIESNWNIMQYLPQTASCQNYFLMIVSAYI
AAVYHSMKEELRRNTPGATPIKRRGGSQASQQAVGDLSALPGMISFSQEYVSNELTQNFF
NITQKIQKKVTGTRSTQPSEMFPVLPGSHLVLNNPALEFIKYVCQVLSLDANIVNQVNKL
KRDLLRLVGVGEFSEDAQFHDPCNSYILPEVICNHCNFCRDLDLCKDPSVAQDGSVLPQW
FCSNCQAQYETESVEMALVEALQKKLMSYTLQDLACNKCKGVKEANMPLYCKCAGDFDLT
FPAKSFAEQITVFRNIASHYNMSFLEETIDWLLAMSPQISIK
NT seq
6789 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccctcaagaggctggagcgcagccagttcaccgacgagatggactcacgcttc
agcttcgacaggatgaaggagccgggggagaaaaccggctggctgatcaacatgcatcct
actgagatcctggatgaagacaaaaggatgattagtgctgtggactattatttcattcag
gaggatggcagcaggtttaaggtggctctcccatacaagccgtatttttatattgccact
aaaaagaactgtgagagagaagttatctcatatttgtcaaagaagttccaaggaaaggtt
tcaaagcttgaaactctcccgaaagaagacctggacctgccaaaccacctggtcggactg
aagagaaactacattaagctgtcattcaacaccgtggatgacctcatcaaagtcaagcgt
gagatttccccggcagtgcgcaagaacagagagagggagcagtccaacgacgcctacacc
tcaatgttatcaagtgccttatcaggtggcaacgtagcgtcagcagatgaagatgcaatg
ttaaagagtatttccgaccagttagacaacatagtggacatgagagagtatgacgtgccc
taccatgtgcgcctgtccatcgacctgaagatccacgtggctcactggtacaatgtccga
tacagaggcagcgccttcccaccagagattgttcggagagatgatcttgtggagcgacca
gaccctgttgttttggcttttgacattgagaccaccaaacttccattgaaattcccagat
gcagagagcgaccagatcatgatgatgtcctacatgatcgatggacaggggtttctaatt
acaaacagagaaatcgtctctgaggacattgaggattttgagttcactcccaaacctgaa
tatgaagggcctttcactattttcaatgaagatgatgaggcggctcttcttcagaggtgg
tttgatcacattcacgaaacaaagcccaacatctttgtaacctacaatggagacttcttt
gattggccttttgttgagacgcgagctgccctccatggacttagcatgtacaaggagatc
ggtttccagaaggatagccagggagagtacaagtccagtcaggccatccacatggactgt
tatagatgggtaaagagagacagttacctaccagtggggagtcataatctaaaggcagca
gctaaggctaaactgggctacgaccctgtggagctggacccagaggagatgtgccgcatg
gcaacagaggaaccacagactttagccacctactctgtgtcagatgctgtggccacatat
tacctctacctgaaatacgttcaccccttcatctttgctctgtgcaccatcatccctatg
gagcctgatgaggtgctgcgtaagggttctgggactctgtgtgaagctttgctcatggtg
caggccttccatgccaacatcattttccccaacaagcaggagcaggtcttcaacaagctg
acagacgacggccatgtcatggactctgagacctacgtgggcggccatgtggaggcactg
gagtccggcgtgttccgcagtgacatcccctgccgtttcaaaatgaacccagctgcattt
gacttcctgtttcaaagagttgagagaacaatgcgtcacgccattgaggaagaggagaaa
atccccttggagcaagtcaccaactttaatgaggtctgcgatgagatcaaacagaagctg
acttctctgaaggaggtcccaaacaggatcgaatgccccctcatttaccatctggatgtc
ggggcgatgtaccccaatatcatcctaaccaaccgcctgcagccatctgccatggtagac
gaagccacctgtgcagcctgtgatttcaacaagcctggtgccacgtgtcagaggaggatg
gcctggcagtggagaggagaaatcatgcctgccagccgcagtgagttccaccgcatccag
cagcaactcgaatccgagaagtttccgccctttttccccaacggtccacctcgggccttc
cacaccctcaatagggaggagcaggccaagcatgagaaaaagcgtttggcagattattgt
aaaagagcctataagaagactcacgtcaccagactggaggagcgagtcactaccatctgc
caaagagaaaactccttttatgttgacactgtgagagctttcagagatcggcgttatgac
ttcaaaggattgcacaaggtgtggaagaagaaactgtcagcagctcacgaaagtggagat
gctgccgaggtgaagcgctgcaagaacatggagatcctgtatgagtctcttcagctggct
cacaagtgtattctcaactctttctatggctacgtcatgaggaaaggggcgcgctggtac
tccatggagatggctggcatcgtgtgctacactggagccaacattatcactcaggccaga
gagctcatcgaacaaatagggaggccccttgagttggacactgatggtatctggtgtgtc
ctcccaaacaccttccctgagaactttgtcatgaaaaccagtaacgaaaaaaagcccaaa
gtgaccatctcctacccaggtgccatgctgaacatcttggtgaaggagggattcaccaac
gatcagtaccatgagctggtcgaccctgcgtcactcacttacaacaccaggtcagagaac
agcatcttcttcgaggtggacggaccatacctggccatgattctgccagcatctaaagaa
gaagggaagaagctgaagaaaaggtacgctgtgtttaatgaagatggctctctggctgag
ttgaagggttttgaagtgaagagaagaggagagctccagctcattaagattttccagtca
tctgtgtttgaggctttcctcaaaggtaccactctggaggaggtctatgcctctgtgtcc
aaagtggccgactactggctggatgtgctatacagtaaggctgccaacatgccagatgca
gagctgtttgagctgatttcagagaatcgttcaatgtccaaaaggctggaggattacgga
gagcagaagtccacttccatcagcacagctaaaagactggctgagttcctgggagaccaa
atggtgaaagacgctggtctgagctgtcgctatgtcatctcccgaaaacctgagggttct
cctgtcacagagagagccattcctctggccatcttccaagcagagcccagtgtgaagaaa
catttccttcgtaagtggttgaagatgcccagtctgcacgagttggacatccgtaccatc
ctggattggggttattacatagagaggttgggtagtgccatccagaaaatcatcaccatc
cctgcagctcttcaacaggtaaagaatccagtacccagagtgagacatcccgactggctt
cataagaaactcctggagaaaaatgacatctacaagcaaaagaaaatcagtgagctgttc
accagtgagggcaagagacaggtggctcatcagcctctcgagggaggtcagactgctgac
atcgaggactttgggatgccagctagacctctgcagccggccatcctcatcagcaccaag
aggaagcgagcttctcagggaggggacagccaggtggagtctcaggatgtggagctcacc
cagtcctggagggagatcctgggaccaccccctcccatgggaaaaacaaaggaggagcga
ctggtgtggctgcgttaccacaagaaaaagtgggagctgcaactcaggcagaggaaggag
aggaagaagaggaggaggctgttggacggagaagcccaacctgtaggtggaggagtaatc
agagacggcccgaccaccggcctgggaagcttcctccgcagaacagctcgcagcatcctg
gacatgccttggcaaattgtgcagattgcagaaactagtcaccccggtttgtacaagttg
tgggctgtgattggaaatgacctccactgcatgaagctcaacatccctcgtgtcttctac
gtcaatcagaaagtcccaaaacaggaggagggagccacgtacaaaaaggtgaaccgcatg
ctgcctcgctccaacatggtgtactacctgtatgaatactgtgtaccagaggacatgtac
caggagcacattaatgagatcaatgctgacctctctgcgccagacatcgaaggagtttat
gaaacacaggtccctttgctgtttcgtgcactggtgcagcttggatgtgtgtgtatggtc
aataagcacgtcgtgagggacctagctggcagggaggctgacacctttgacttggagcat
ctagaaatgagatctctagcccagttcagctacctggagcctgggagtgttcgccacatg
tacctgtaccatcacagccagggtcacaaggctttgtttggccttttcatcccctcacag
cgtaaagccagcatctttgtcttggacacagttcgaagcaaccagatgcccaacctgagt
aacctctacacagctgagcgcactgctctcctggagaagatgacagaggagctgctgcct
ccagagaaacacaactttgaggttcgggctgaaaacgacgtgaaggctatctaccgcgca
cttcaacgcatactgctaaactataaggaggagcgtcgtgggccgaccctcatcgcagtg
cagtctaactgggagttgcggcgattggcagcgggtatgccagtgcttgaggagttccct
gtcgttccagtgcacgtgatcgatgaaatcagttataatgtgctggactggcaacgccat
ggtgcccgacgcatggtccgccactacctcaacctggacagctgcctgtcacaggctttc
gacatggccaggtattaccacttacctgtgggtaacctgcctcaggatgtgtccatcttt
ggctcagacttgttcctggcaagacatctgcggaaacacaaccacctgctgtggctttca
cccacagccaggccagacctcgggggaaaggaggcggatgacagccgtctggtcatggaa
agtgatgacaggtgctctgtggaaatcaacgctcaaggatgctattctacagtgtgtgtg
gagctggacgtgcagagcctggcggtgaacaccatcctccagtcgcagcatgtcaatgac
atggagggtggatccagtatgggggtcagttttgacgtgatccagcaggcgtctttggag
gacatgatgtcaggaaaccaaggagccagctctcttgccagctacgatgagaccgctctc
tgctccaacaccttcaggatcttgaagagcatggtagtgggctgggttagggagattaca
cagtaccacaatgtgtacgcagacaaccaggtgatgcacttctaccgctggctgcgctcc
cccagctctctgctctatgaccctgcattgcaccgtaccctgcacaacatgatgaagaag
gtcttcctccagttggttgcagagtttaaacgtctcggctccactgtggtttacggaaac
ttcaacaggatcatcttgtgtactaaaaaacggaggatagatgatgccattggctacgta
gaatacatcaccaacagcatacactccagagaaatcttccactctttgtccatctccttc
tcccgatgctgggagtttatgctatggatggatctggccaactatggcggtgtgaagggc
agactgccttccagcgtcttgtatggagaggatggagccaaacagaagaaagaaaacaga
gaggaaggaggcgaggacggcagtgaggatgaagatgaggatgaagccaacgttgaggaa
gatgatggagagacggacgaggtggaggagctgattgaaagcaactggaacatcatgcag
tatctgcctcaaaccgcctcttgtcagaactacttcctcatgattgtctcagcttatatt
gcagcggtgtaccacagcatgaaagaggagctgcgacgcaacactcctggagcaacgccc
atcaagaggcgtggaggcagccaggcatcccagcaggcagtaggagacttgagtgctctt
cctggaatgatctccttctcccaggaatatgtgtccaacgagctgacgcaaaactttttc
aacatcacacaaaaaattcagaagaaggtgacaggtacgaggagtacccagccctcagag
atgtttcccgtcctgcctggttcacacctggtgcttaacaacccagcactggagttcatc
aaatatgtctgccaggtcctgtcactagacgcaaacattgtgaaccaggtgaacaagctg
aagagagacctcctgcgcctcgtgggtgttggagagttctcggaggacgctcagttccat
gatccctgtaactcttacatcctgccagaagtcatctgcaaccactgtaacttctgccgt
gacctcgacctctgcaaggacccatctgtggcacaagatggatctgtcttgcctcagtgg
ttctgctccaactgtcaggcccagtatgagactgagtctgtggagatggctttggttgaa
gctctgcagaagaaactgatgagctacactctgcaggacctggcgtgtaacaaatgtaaa
ggggtgaaggaggcaaacatgcccctctactgcaaatgtgccggagactttgacctcacc
ttcccagcaaagagcttcgcagagcagatcacagtgtttcggaacatagcgtcccactac
aacatgagcttcctggaggaaaccattgactggctccttgccatgagtccacagatcagc
ataaagtaa
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integrated database retrieval system
