Scomber scombrus (Atlantic mackerel): 133979486
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Entry
133979486 CDS
T10651
Symbol
rab11fip1a
Name
(RefSeq) rab11 family-interacting protein 1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
133979486 (rab11fip1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133979486 (rab11fip1a)
Membrane trafficking [BR:
ssco04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
133979486 (rab11fip1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
Motif
Other DBs
NCBI-GeneID:
133979486
NCBI-ProteinID:
XP_062273995
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All DBs
Position
4:11433092..11446840
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AA seq
1302 aa
AA seq
DB search
MSLADQSQQWFPTSVQVTVHQARSLRVKGKNGTNDAYAIIQVSKDKFSTSVAEKCVAPVW
KEEASFDLPLFHPGNTERCTLYIVVMHRAQVGLDKFLGQAVINLLDQHDNKSRKKTDWFK
LVDKSGKEDKARGEVLVDLQFMRNNMSASMFDLSMQDKPRSRISKIKDKVRGKKKDGFSD
SASAIVPSVSQVLTDSEGEADSVSLHQTPGGKKKSKLKTLFAPKSNLQKNMSQSMSTLGT
LPEKNSSLSSSRSSGLNVETPEVKKKFKFLGHKRTGSSDSKISQGPFSLLGRSKQSNSDL
NNLCINGSHVYEDTEPKSGSTLSLNSSGQGSVEDVRKHTSDVSADSFKSIPVPSHSRQPS
DRDILEQQRHQEEEEERRQAQERRIAEAKRQEEEEKSRAEARRRQEEEEKSRAEARRRQE
EEEKSRAEARRQQEEEERMYKEEQERKRHSLEDEARRKKQRDEEEYRKKQEEEHQMLEAA
ENERFEEEHRRLEEQKRQEEASMSDRLTSLFGMIRKKEEKKEEAQQITKEEVPTVAPHSD
SRDPDHPITHHSTNPFEDVVLSSDTRVSSNESPAGLQKPNRNPQTPSAMVFHNRTAKVSA
VKPRWAQSLTSEPTDSLCPSQECLSPTTHESTLSSVPSESPDTFSNLHSSLAPANISQSP
SGSPPCSIDNPSSVGSSPTMADKKRRAPQPPLHPVHETQPGGNHVPVREISNPGYVEADG
SQQDKKYSLPLPDYETLFPQKRHGVQGQTRWDHIIAEVNQRQREAPPELLGPEMSVDGPE
EHEPSHRTSPPQEKHYQTQLLEAKPASSKKVAAPAPPKPAASLQPRSVADSGQIQSQNMA
QTHQSLMRPNPSAAMRPQNTDTSSGRSLPGVSRDGARKELQPPPIATNAPRPTSQMDQDT
APTDDQRKVPVTMNKDAPIAKPRQRVSGKEPAEQDSVVTPVLSYKNMNSNNQTSSRSSMS
NTNKTGVKAEENFVEFDPFPNTELLSEDPWAQLSQNQEADKLFTGGVQKEQKPEDRGLTP
GDLDQIFSQVKPTDPFTSFNGSNSNKQNEYRNKEDDSKQFSPAFQRKNSQKRKQMLPSIT
HLEKGSKSREEPAYQEETADKGLPARDVANEFISPKHQSDVKTQSSFHGREDPFGAEAFS
VPSALTSSETLQVVMEEPASQAGVLSGGKTLLRAWVSPSEVQPVSAQNSNGGGLALTPRR
PHPVKPMSSADTQHPISTPAVKEIKAHDGIPAKIKVADSMESGPYTQLTQEELITLVVKQ
QTDLSRKDAKIVELEEYIDNLLVRVIEEQPTILQALNFSKPV
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgtctctggccgaccagagccagcagtggttcccaaccagcgtacaggtaacggtgcat
caagctcggagcctgcgagtcaagggcaaaaatggcaccaacgacgcctatgccatcatc
caggtgtccaaagacaagttttctacctccgtggcagagaaatgtgtggctccagtgtgg
aaagaggaggcttcgtttgacctgccgctcttccacccaggcaacactgagcgctgcacc
ctgtacatcgtagtgatgcatcgagcccaagtgggactcgacaaattcttggggcaagct
gtgataaacttactggatcaacacgacaacaagtctcgcaaaaagacagattggttcaag
ctggtggacaagtctgggaaggaggacaaggcacgaggggaggtgctagttgatctccag
ttcatgcgaaacaacatgtcagctagcatgtttgacctttctatgcaggacaaaccgcgc
tcccgcatctccaagataaaagacaaagtccgcgggaagaaaaaggatggcttctccgac
tctgcctcggccattgtcccgtctgtgagccaagtcctgacagacagcgagggggaggcc
gattcagtctcacttcatcagactccaggagggaaaaagaaatctaaactcaaaaccctc
tttgctcccaaatcaaacttgcagaagaacatgtcacagtccatgtctacactggggacg
cttcccgagaagaactcatctctcagtagcagccgctcatctggcctcaatgtagagacc
cctgaagtgaagaagaaattcaaattcttgggccacaagcggacaggcagctctgacagc
aagatctctcagggtcctttctccttactgggccgctccaagcagagcaacagtgaccta
aacaatctgtgcatcaatggcagccatgtgtatgaggacacagagcccaaaagtggatct
actctcagtcttaacagctcaggccaaggatctgtggaggatgtccggaaacacacctct
gatgtctctgcagattctttcaaaagcatacctgtgccttcccacagccgtcagccttca
gatagggatatactggagcaacagcgccatcaagaggaggaggaggagagaaggcaggca
caagaaaggcgcatagcagaggccaagaggcaggaggaagaggagaaatcaagggcggag
gccaggagacggcaagaggaagaggagaaatccagggcagaggccaggagacggcaggag
gaagaggagaaatccagggcagaggccaggagacagcaggaggaagaagaacgcatgtac
aaagaggaacaggagaggaagagacactccctcgaggatgaagcaagaaggaagaaacag
agggacgaggaggaatataggaagaagcaagaggaagaacaccagatgctggaagcagct
gagaatgagaggtttgaagaggagcatcgcagactagaggagcagaaacgacaggaggag
gcttccatgagcgacaggctgacatctctgtttggaatgatccgaaagaaggaggagaaa
aaagaggaggcacagcaaataaccaaagaggaagtacccacagtagcccctcacagtgac
tcgagagatcctgatcatccaatcacccaccactccaccaacccatttgaggatgttgtc
ctcagctcagatactagagtcagcagtaacgaaagcccagctggtcttcagaaacccaac
cgcaacccacaaactccctctgccatggtcttccacaaccgcactgcaaaggtgtctgca
gtcaaacccagatgggctcaatcactgacgtctgaacccactgactccttatgccccagt
caagagtgtctctccccaaccacccatgaatccaccctctctagtgtcccatctgagtcg
cctgatactttctccaaccttcactcatctctggctccagcaaacattagtcaaagtcca
tctggatcccctccttgcagcatagacaatccatcatctgtgggatcttcacccaccatg
gctgataagaagagaagagccccccagccacccttgcatcctgtacatgagacccagcct
ggaggaaaccatgtccctgtcagagagatcagtaaccctggatatgttgaggcagatggg
tcgcagcaagacaaaaaatactccctaccactccctgattatgaaacgctcttcccccag
aagagacatggagtacaggggcagactcgatgggaccatataattgctgaggtcaatcag
agacaacgggaggctccacctgaattactaggtccagagatgagtgtggatggcccagag
gagcatgaacccagtcataggacttcacctcctcaagagaagcattatcaaacacaactt
ctggaagcaaaacctgcgtcatcaaaaaaagtagcagccccagctccccctaaaccagcg
gcatctctgcaacctagatcagtggcagactctggtcaaatacaaagccagaacatggca
cagactcaccagtctcttatgaggcccaatccctctgcagccatgagacctcaaaacact
gacacatcaagtggaagaagtctcccaggggtgtccagggatggagcaagaaaggagctg
caaccaccgcctatagcaacaaatgctcccagaccaaccagccaaatggaccaggataca
gcaccaacagatgaccaaaggaaagtgccagtcaccatgaacaaagatgctcccatagcc
aaacccaggcaaagggtcagtggcaaagagccagcagagcaagactctgttgtcacacca
gtattgtcttacaaaaatatgaacagtaacaaccaaacatcatccaggtcaagtatgagc
aacacaaacaaaacaggcgtgaaggcagaggagaactttgttgagtttgacccattccca
aacactgagcttctctccgaggacccgtgggcacaactgagccagaaccaagaagcagat
aaactcttcactggcggtgtacagaaagagcagaaaccagaagatcgcggattgacacca
ggtgatcttgatcaaatctttagtcaagttaaaccgacagatcctttcacaagttttaat
ggcagcaattcaaacaaacaaaacgagtacaggaacaaagaggacgattcaaagcaattc
agtcctgctttccaaagaaaaaattcacaaaagcgaaaacagatgcttccttcaataact
cacttagagaaaggctccaaatcccgagaagaacccgcatatcaagaagaaacggctgat
aaaggcctccccgcaagagatgttgcaaatgagttcatctctccaaagcatcaatcggat
gtgaaaacacaaagcagctttcatggcagagaggatcctttcggagctgaagcttttagt
gtaccgtctgctttgacttcctcagagacgctccaggtagttatggaggaaccagcatca
caggcaggagtgttgtctgggggaaagactcttttgcgagcatgggtttcaccctctgag
gttcagcctgtcagtgctcagaatagcaatggaggtgggctagccttaactccacgcagg
cctcatccagtgaagcccatgagttcagctgatacccagcatccaatcagcacccctgct
gtgaaagagataaaggcccatgatggcattccagcaaagattaaggtggcagactcaatg
gaaagtgggccttacactcagctgacacaggaagagttgatcacgctggtggtgaagcag
caaactgacctgtccaggaaggacgctaagatcgttgagctcgaagagtacatagacaac
ctgctggtccgtgttatcgaagagcagcccactatccttcaagccctcaacttttccaag
ccagtgtaa
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integrated database retrieval system
