Scomber scombrus (Atlantic mackerel): 133979560
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Entry
133979560 CDS
T10651
Name
(RefSeq) non-muscle caldesmon-like isoform X1
KO
K12327
caldesmon
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
133979560
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssco04812
]
133979560
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Others
133979560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caldesmon
Motif
Other DBs
NCBI-GeneID:
133979560
NCBI-ProteinID:
XP_062274087
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Position
1:complement(33607367..33642851)
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AA seq
539 aa
AA seq
DB search
MSDSLRRKSSSRQLLLNLIRVTAQRSQEDAEEVERERRRRAREKQSGEGSPSCPERPQNN
SLAHNKESEEELKPSCCLVLDEDEGFSDWSHRLENRNDPEAQDDGRTRQQRPSTLQWKPD
KEEKQQEDKKEQGWEPEQSSRSQGASSRPPEKLSCKKKEARTSYSSSVFMPQDTRLQNAT
GQPADRTSYLAAGTMKPRGGACQMDGAVKQEVQKVQQEEVQKVQQEEVQAALQREWGAAE
TTQGPADEDDQEEEELSFTHEEKEDLHLETEERQTVEGDVQRMLDERSMEDRDWRSEEIN
RESAASHCSSEKSEEQLNCYGPMSPTFKKLLIQFYPDEVNSRVSTDGKCTITERTESLRK
STSNIKKTPPPAPVSKIDKRLEQYTHALELSTKEGKSGVQALTDLMNPTEPVASKKNLFE
AGDAWNQNTVSVTPSKDADGLKVGVADLINQWVKGGEDGSRCSSPSKPAEIKPGDVLNKK
NLWEGITDTLSSGKEGKECSAGKRYKFVVTGHGKYEKIPVDDCGEDANYPPDEQFHEDL
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtcagactccctcaggagaaaaagctccagcagacagctcctgctgaacctcatcagg
gtgacagcccagcggagccaggaggatgctgaggaggtggagcgggagcgaaggaggaga
gccagggagaagcagagcggagaggggagcccctcctgtccagagcgcccccaaaacaac
agcctcgctcacaacaaagagtcagaagaggagctgaagcccagctgctgcctggttctg
gatgaagacgagggtttcagcgactggagccacaggttggagaaccgtaacgacccggag
gcgcaggatgacggcaggaccagacagcagagaccttcgacactacagtggaaaccagac
aaagaggagaaacagcaggaggataaaaaggagcagggatgggagccagaacaaagcagt
cgatcccagggagcttcatcaagacctccagagaagttgtcctgcaagaaaaaggaagca
aggacgtcatacagctcgtcagtcttcatgccgcaggacaccagactgcagaacgccacc
ggccaaccagcagacaggacatcatacctggcagcagggacgatgaagccacgtgggggc
gcctgccagatggacggagcggtgaagcaggaggtgcagaaggtgcagcaggaagaggtg
cagaaggtgcagcaggaagaggtgcaggcagctttgcagagggagtggggggcagcagaa
accacacagggccccgctgatgaagacgaccaggaggaagaagagctgagcttcacacat
gaagaaaaggaagacctccatctcgagacagaggagagacaaacagtggagggagatgtg
cagaggatgctagatgagagatcaatggaggacagagactggaggagtgaggagatcaac
agggagtctgcagcttctcattgcagcagcgagaaaagcgaggagcagttgaactgctac
ggtcccatgagcccgacattcaagaaactcctcattcagttttacccagatgaagtgaac
agcagagtctcgaccgacggtaaatgcacgatcacagagcgaaccgaatctctgagaaaa
agcaccagcaatataaagaaaacgcctccacctgctcctgtgtccaagattgacaagaga
ctggagcagtacacacatgccctggagctttccacaaaggaaggcaaatcaggcgttcag
gcgctgacggatctgatgaatcccactgaacccgtcgcctccaaaaagaacctgtttgag
gccggagacgcctggaaccaaaacaccgtctccgtcacaccatcgaaggatgcagatggt
ttaaaagtcggagtggctgatctcatcaaccagtgggtgaaaggaggagaagatggaagc
aggtgcagctcgccctccaaaccagcagaaattaaacccggtgatgttttaaacaagaag
aacttatgggagggcatcactgatactttatcctccggaaaggaaggcaaggagtgctct
gctggtaaaagatataagtttgtggtgacgggtcacggcaagtacgagaagattcctgtt
gacgactgcggtgaagatgcaaactacccgccagatgaacagttccacgaggatttgtaa
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