Scomber scombrus (Atlantic mackerel): 133979563
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Entry
133979563 CDS
T10651
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133979563 (vps13a)
Membrane trafficking [BR:
ssco04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
133979563 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
133979563
NCBI-ProteinID:
XP_062274088
LinkDB
All DBs
Position
4:17122796..17164100
Genome browser
AA seq
3284 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAILTNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKLKAAEQENPKLEKQDTFVEKLVTQVIKNVQVKISNIHIRYEDDVTNPNCPLSFGVSLK
NLSLQTSDKNWNPSLLDENAKLFFKLVQLDSLFAYWSVNSVLFSNHNAEEALRCLKNSME
IDSSYPVDHDFIFRPISAAARLRMNPRSDVDFSSPKVDLMVNLSEVAIELNRPQYISILE
LLGSVDMMSRNLPYRKYRPDVHVHKNACVWWRYVITSILEVDVKPRLHMWSWQHIRRHRI
VVKRYRELYKTKITSKKPSEELLKQLEEPEKTLDIFNITLARQQAEVEASKAGLRIYRPG
MKMEEEESQGWLSWVWNWGGEPDTQEKEVKTGGSGFDELLTSAEKAKLYTAIGYSDTAVN
SNLPKDFEDMKVNFHMEKLSVSIKDNKDKNEIITLTVGELLSTLTQRPGAQAIKLTAKLS
LFEVTGLADKRPAPTLLSSRKAATGTGTPLLSILFETNPMDDSANQRLHVESQPLEIIYD
AITVNGMSAFFMPPDDLQLDELTNATLMKLEQFRDRTATGLMYVIETQKVLDLKVNLMAS
YVIIPQTGFYNATQNILLLDLGHFKMSSKSKKHLPQLSVGSSNIEDIMSRAYDSFDIQLS
SLQFLYSKPDGDWKMARKQKQSPLHILEPVDLKVVFSRAMVVKDSRMAKYKISGELPLLS
LRISDNKLRSVLELVDSIPLPESKPRSAGPSSIQKSKQSFTPQLTPRRPLNLADQRSSLI
FESCETISITSLGSEEDLFYDAPSSPVGDKPFFPDNPMPLRYADLHKRKSLIKEDTQKNM
TDFAMTFEISEFSVQLCRLSGGQEVTVLHLDIEGLGTELKLRTFDMTSNTYLKEICLKCP
EYMDSEEKQVQLITTLDNTEVDLLTLEYIKADKNGPEFKSQHNNTEQLIKVTFSSLDVHL
HTEALLTTINFLNNLLPPSTKKEGGQEELPTIPEEEEAEGEREREGEKKEETTVAKKKTS
KSSKFADIVNLHIRADLRCLKVFIRGEKARISEISIEGLVSEVLMRKKNMEVLANLKNIV
ILDCDNDAFYKKAVSIADKEVFAFRMVNYTDATEGDAYLDMSNVDTSVSLTVGCIQVIFL
NKFVYSILAFINNFQEAKDALAEVTVQAAEKAASGVKELAERSTRIALNVHFNAPIIFLP
QSSTSPNVIVADLGFLSVKNSFVKQPFKDDAKIPPVVDRMTVRLTDLKMYRTTYLNEGFQ
GETQLLMPVSLDLEIQRNLSSNWYHSIPDIEITAHLKPMSLILSQDDMTVVLRTLSENLS
EKSDAVPLPVPPPTTDPSSDCVSNKESQGSGTTGPASSNTVVTAAVVETQKNSKLKSTLK
LDFKFDSMTLVLYSPNGNELPPLDSHDEQLKLAEFTLGTISTSIHMFSDSSMKASVRLAT
CLLDDKRPKIKMVTPRMMELCPGAEQNMMVEVNYRQGRDGTTLDTVVQDVYLCASMEFLL
TVADIFLKATQQGFAQVPQPKNSTGSGEKKNINSSVTSKESTATPAVVSKTEMNVLVRNP
EIVFVADLTRADAPALVMTTQCELVMKSDAEGSQMTAVIKDLKVVACPFLREKRKNNVTT
VLQPCQVFFQSTQSSTSPQAMEVSINALTLKVSPIIINTVITIQSALNTTAETPEELESP
VPVDMWERRGWKELKLWFLEEEGDEDIKSLVPLIPQGESLQMTIKSICLTLEAGVGHRTV
PMLLAKSSFHGDVTNWSTLINLHSELNLEVHYYNEMMGVWEPLLEPLEDETRDGFRPWTL
KLKMKKKPVKHTSWADEVDYNIPDYKTVIAISSKDQLNITLSKCGLAMLSNLGTAFAEAA
KQTAECFQKDEAPFVVKNRLGLPVFVCHSEMFCPIGQQSTNRTVELQDGETLGMDYSTTT
DSDQFSAMTSLSGKDYYIQPTPVGHTSTSVIPLIKVGRGMYSVMHKESGVTRFLVCQIYS
VEGSKYIKIRSPFQIINHFSIPFKVFEGSTCLGTALPTEEFCVPLDSYRSELSIRPITEE
DADNQGEQFDCSEGFSYEDVSNLQPDSRLQQTCRRRGELSGVLMVNIVPVKDAVTFKQTG
GVGEHFDVPFVLHLWPPILLRNLLPYPIAYELKDSGVSAPEATLDPGHSAQLHTAVVDQS
SLDLRLLNYLAQDWSSKYNLRRDQEEITFIVFQSLREDEEEDGEGSERKREELDIAVHVK
YDLGQTVVAIHSPYWMVNKTGRLLQYKADDIHRKHPLEYDMPLLFSFKPRYFMRNNKVRL
MISDSELSDEFSLDTVGSHGDVKCKGRYKDYLVGVKIDASSFSLTRIVTFVPFYMLVNRT
KHCVYICEVGQENWTEAEPEQSAIPFWPENDAKRLKIKVHGCLSPPRIIDFTRPENCLLL
HLDNSVGGIIVDVNLSEHSATIRFSEYHDGAAPFLIINHTKDQTLQFHQSARTESTWVAD
ELLDLSFSVEEDSSQKAVEQEELDPGRAMHYTWAEPTGSRELCWKCGSYSGKLKSEEDLC
EDMNNDRKLFVISFYEGLQRVVLFTEEYRIYKLLCESEKAQLAEQEIILSLQNMGVSLVN
NTSSQEVSFIGITSSDVVWELKPKKKSRWKTLSTKEVEMLESRFKEYIESGPIDNAIVDL
ENNYQVSFTPNGMDMRMLQPCDAPLRRHFLPGVKVEYSVSPRQSSYRVQIHRIQIQNQLP
GAIFPYVFYPVKLPKSITMDAEPKPLTDISIVTRTAGHSDISRIKYFKVLIQEMDLKLDL
GFLYAILDMFTPENASIMSSEQEVELFENDIENMKIELNSVSAADTSPISLYEYFHISPI
KLHLSFSLSSGGEDGLKEKRDKELIPVQSLNLLLKSIGATLTDAQDVVFKLAFFELTFQF
CTTQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQG
PEEFVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAITMDEDYQQKRREAMNKQPS
GLREGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGII
DMASSTFQGIKRAAETSQDIQSLRPPRFIHEDRVIRPYKEREGIGSQMLQKIENGRFAKY
RYFAHAKVNDSDFLMITKRGIFFVTKGTFGQLTCEWQYLFEEFTKEPLIVEDRRLRIEAK
ERVKSVFHAKEFGKIINFRTPEIAKWVLTKLEDAREFTQSLTEK
NT seq
9855 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcctggttgtagacgtcctcaacagatttttaggggactacgttgtc
aaccttgacagctcacagcttaaactcggcatatggggaggtgatgctattcttacaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtgagagctgga
cacataggacgactggagctaaagattccctggaagaacttgtacacccaatcggtggag
gccacactcgatggtgtctatctgctcatagtccccacagcaagtataaaatatgatgca
gaaaaggaggagaagcagctgcaggaggctcgccagagggagctacagcggatagaggag
acaaagctgaaggctgcagagcaagaaaaccccaagctagagaagcaggacacctttgtg
gaaaagcttgtcactcaggtcatcaaaaatgtgcaagtcaagatctctaacatccacata
cgctatgaagatgatgtcactaatccaaactgtcctttgtcatttggagtgtcacttaaa
aacctcagccttcagacgtctgataaaaactggaatcccagccttttggatgagaacgca
aagctttttttcaagctggtccagttagacagcttgtttgcctactggagcgtcaactca
gtactcttctccaatcacaatgcagaggaagctttgcgatgtctcaagaacagcatggaa
atcgacagctcttatcctgtcgaccatgatttcatttttcgtcccatctcagcggctgct
agacttcgcatgaatcctcggtcggatgtggacttctcttctcctaaagtggacttgatg
gtcaatctcagtgaagtggccattgaacttaacagaccccagtacattagtatcctggag
ttgctgggctcagtggatatgatgtcacggaacctgccgtacaggaagtacagacctgat
gtccacgttcacaagaatgcctgcgtatggtggaggtatgtcatcacaagtatcctggag
gtggatgtaaagcctcgtctccacatgtggtcatggcaacacattcgtcgacacaggatc
gtggtgaaacgttaccgggagctctacaagaccaagatcaccagcaagaaacccagcgag
gagttacttaagcaactagaggaaccggaaaagacgttggatatttttaacatcacgctg
gccagacagcaggctgaggttgaggcgagcaaggcaggcctgcgtatttaccgtccaggg
atgaagatggaggaagaagagtctcagggttggttaagctgggtgtggaactggggagga
gagcctgatacacaagaaaaagaggtcaagactggaggatcaggttttgatgagctatta
acctctgctgagaaagccaaactttacactgccattggatacagtgatactgctgtcaat
tccaatctgccaaaggactttgaggacatgaaggtcaacttccacatggagaagctgtcc
gtatccatcaaagacaacaaggacaaaaatgagatcatcacgctgactgtgggagagctt
ctgtccaccctcacacagagacctggagcgcaagccatcaaactcacagccaagcttagt
ttgtttgaggtgacaggtttggccgataagcggcctgcaccgaccctcctgtcatcaagg
aaggcagctacaggaacagggaccccgctgcttagtattttatttgagaccaacccaatg
gacgacagtgctaatcagcgtcttcatgtggaatcacagccactagaaataatctatgat
gcaattacagtgaatggcatgtcagccttcttcatgcctcctgatgacctgcagctggat
gagctcaccaacgccaccctgatgaaactggagcagtttcgagaccgcacagccactggt
ctaatgtatgtgatcgagacccagaaagttcttgacttgaaggtgaacttgatggcttct
tacgtcatcattccacagaccggtttctacaatgcaactcagaacatcctgctgctggat
cttggacatttcaagatgtccagtaagagcaagaagcatctacctcagctgtcagtgggc
tccagcaacattgaagacatcatgtccagagcctacgacagctttgacattcagcttagc
agcctgcagttcctttatagcaaaccagatggtgactggaaaatggcccgtaagcagaaa
caatcaccgctccacatcctggagccagtagatcttaaagtggtgttcagtcgggcaatg
gttgtcaaagactcacgtatggcaaagtataagatttctggagagcttcctctgctttct
cttcgtatttctgataataaactccgaagcgttctggagctggtagacagcatcccttta
ccagagagcaaaccacgcagcgctggtccatcctccattcaaaagtcaaagcagtcgttc
accccccagctcactcccaggagacctctgaacttagccgaccagcgctcctctctcatt
ttcgagtcatgtgagaccatcagcatcacttcattggggtcagaagaagatttgttctac
gatgctcctagctctccagtcggtgataaaccattcttcccagacaatcccatgcccctg
cgctacgcagacttgcacaaaagaaaaagtctgatcaaggaagacactcagaagaacatg
actgacttcgctatgacatttgaaatcagtgagttttctgttcagttgtgccgtctgtct
gggggtcaggaggtcacagtgctacacttggacatagagggtctgggcacggaactgaaa
ctgcgcacctttgacatgacatcgaacacctaccttaaagagatctgcctcaagtgtcct
gaatacatggattctgaagagaagcaggttcagctgatcacaactctagacaacacagag
gttgacctgctaaccctggagtatattaaagctgataagaatggaccggagttcaagtct
caacacaacaatacagagcagctcattaaggtgaccttctcatccttggatgttcatctc
catacggaggctctcctaaccaccatcaacttcctcaacaacctcctgcctccatccact
aagaaggagggagggcaggaggagctccccaccatccctgaggaggaagaggcagagggg
gagagggagagggagggggagaaaaaggaggaaactactgtagccaagaaaaaaacttca
aagagttcaaagtttgcagacattgtgaatctgcatatcagagctgatctccgctgtctg
aaggttttcattcgaggagagaaagccaggatttctgagatcagcattgaaggtctggtt
tctgaggttctgatgaggaaaaagaacatggaagttctggccaacctgaagaatattgtg
atccttgactgtgataatgacgccttttacaagaaggctgtgtcaatagcagacaaggaa
gtgtttgccttccgcatggtgaactacacagatgcaacagaaggagatgcctatttggac
atgtctaacgttgacacctccgtctcactgactgtgggatgcatccaggtcatctttctc
aacaagtttgtctactccatactggcatttatcaataacttccaggaggctaaagatgcc
ctggctgaggtgacagtccaagctgcagaaaaggcagcgtcaggtgtgaaagaactggca
gagcgcagcacacggatcgctctgaacgtccacttcaatgcacctatcatcttcctcccc
cagtcatccacttctcccaatgtcatcgtggctgatctcggcttcctctctgttaagaac
agttttgtcaagcagccctttaaagatgatgcaaagatcccgcctgttgtggatagaatg
acagtgagactgactgacctcaagatgtacagaaccacatacttaaatgaaggatttcag
ggagagacccaactgttgatgccagtcagccttgacttggaaatccagagaaatctttca
tccaactggtaccacagcatacctgacatagagatcactgctcatcttaagcccatgagt
ctgatcctcagccaggatgatatgacagtggtcctgaggactctgagtgaaaacctgtcg
gagaaatctgatgccgtcccccttccagttcctccaccaaccacagacccctcctctgac
tgtgtgtccaacaaagaatcccagggctctgggaccactggacccgccagcagtaacaca
gtggtgacagcggctgttgtggaaacccagaagaacagcaaactgaagagcacgctcaaa
ttagacttcaagttcgactccatgacacttgtcctgtacagcccaaatggaaatgagtta
ccgccgttggactcacatgatgagcagctgaaactggcagagtttactctgggaaccatc
tctacctccatccacatgttctccgacagctccatgaaagcttcagtacgactggctacc
tgtctactagatgacaagagacccaaaatcaagatggtcaccccgaggatgatggaactg
tgtcctggtgcagaacagaacatgatggtggaggtgaactaccgtcagggccgtgatggc
accactttggacacagtggtgcaggatgtgtacctgtgtgccagcatggagttcctactc
actgtggcagatatctttctcaaggccacccaacagggcttcgctcaagttccacaaccc
aagaacagtactggatcaggggaaaagaagaacattaactcctctgtcacatctaaagag
tctactgcaactccggctgttgtgtcaaagacagagatgaatgtcttagtgcgaaatcca
gagattgtgtttgttgctgacctgacacgtgccgacgccccagccctggtgatgaccaca
cagtgtgaactagtaatgaaaagtgatgcagagggttcacagatgactgctgttatcaag
gacctcaaggtagtggcgtgtccgttcttgagagagaagaggaaaaacaatgtgaccaca
gtactacagccgtgtcaggtgttcttccagagtactcagtcctcaacctcccctcaggct
atggaggtgtccatcaatgctctcacactgaaggtatctccaatcatcattaacacagtc
atcaccatccagtctgcattgaataccacagcagaaactccagaggaactggaaagtccc
gtccccgtggacatgtgggagagacggggctggaaggaactcaaactctggttcctagag
gaggagggggatgaagacataaagtcactggtcccattgataccacagggagagtcatta
cagatgaccatcaaatcaatctgtctgactctggaggctggagtgggacaccgcacagtc
cccatgcttctggctaagtcctccttccatggagatgtcacaaactggtctacactcatt
aacttacacagcgaactcaacttagaggtacactattacaatgagatgatgggagtgtgg
gaaccactgctggagcccttagaggatgagacaagagatggtttcagaccctggacatta
aaactgaagatgaagaagaagccagtgaagcacacaagttgggcagatgaagttgattac
aatatcccagactacaagactgtcattgccatcagcagtaaggaccagctcaacatcaca
ctttccaaatgtggactggccatgctgagtaatctgggcacggcatttgctgaggctgcc
aaacagacagctgagtgctttcagaaggatgaagctccttttgtggtgaaaaaccgcctg
ggcttgccagtgtttgtctgccacagtgagatgttttgtcccattggccagcagagcacc
aaccgcacagtggagctgcaagacggggaaaccctcgggatggactattcaaccactaca
gactccgaccagttctccgctatgacctccttgagtggaaaagactactacatacagcct
actccggtgggccatacctcaaccagtgtgatccccctgatcaaggttggcaggggaatg
tacagtgtaatgcacaaagagtcgggagtcactcgcttcctggtctgtcagatttactct
gtggagggcagcaagtacatcaagatccgctctcctttccagatcatcaatcatttctca
atcccattcaaagtttttgaggggtcgacatgtttgggtacagctctccctactgaggag
ttttgtgtgcctctggactcatacaggtctgagctgagcattcggccaataacagaggaa
gacgctgacaatcagggagagcagtttgattgctcagagggctttagttacgaagatgtc
agcaacctgcagcctgactcacgcctccagcagacctgccgtcgccgtggagaactcagt
ggtgtgctgatggtcaacattgtgccagttaaggacgctgtgacgttcaaacaaactggg
ggtgtgggggaacactttgatgtgccctttgtgcttcacctgtggcctcccatcctgctg
cgcaatctgttgccttatcccattgcctatgaactaaaggacagtggagtctctgcccct
gaagccactctggacccaggccactctgcccagcttcacactgcagttgttgaccagtca
agtcttgatctccgcctgcttaattacttggctcaggattggtcctctaaatacaatctc
cgcagagaccaggaggagatcaccttcatcgtgttccagtctctccgagaggacgaggag
gaggatggtgaagggtcagagagaaagagggaagagttggatatagcagtgcatgttaaa
tatgacctaggacagacagtggttgctatccattcaccgtattggatggtgaataagacg
ggaaggttgctgcagtacaaggctgatgatatccatcgcaaacacccactggaatatgac
atgccactgcttttctcctttaaacctcgttacttcatgagaaacaataaggtccgttta
atgatctcagacagcgagctgtcagatgaattttccctggacacagttggtagccatgga
gatgtgaaatgtaaaggccgatacaaagattacctggttggtgtaaagattgatgcgagc
agtttcagtctgacccgcatcgtgacctttgtgccgttttacatgctggtcaacagaacc
aagcactgtgtctacatctgtgaggtggggcaggaaaactggaccgaggctgaaccagaa
cagtcagccatacctttctggcctgagaacgatgccaagcggctcaaaatcaaagtacat
ggttgtttatcgcctcctcggattattgacttcacacgaccagagaactgcttattgctg
cacctggataactctgtgggcgggatcattgtcgatgtgaacctatcagaacactctgcc
acaatcagattctctgagtaccatgacggagcagctccctttcttatcatcaaccacacc
aaagaccagactctgcaattccatcagagcgcccggacagaatccacgtgggtggctgat
gagctgctcgatctctccttctcagtggaggaggacagctctcagaaggcggtggagcag
gaggagctggatcctgggagagccatgcactacacctgggctgaacccactgggtcaaga
gagctttgctggaagtgtggaagttacagtgggaagctgaagagtgaggaggacctgtgt
gaggatatgaacaatgacaggaagctgtttgtgatctccttttatgaaggtctccagcgt
gttgtgctgtttactgaggagtatcgcatctacaaattgttgtgtgagagtgagaaggca
cagctggctgagcaggaaattatcctgtcgctacagaacatgggcgtgtctctggtcaac
aacactagcagccaggaggtctccttcatcgggatcacaagctcggatgtggtgtgggaa
ttaaagcctaagaaaaagagtcggtggaagactctgagcactaaagaagttgagatgctg
gagagccgcttcaaagagtacatagaatccggacccattgacaatgccatcgtggacctt
gaaaacaactaccaggtgagctttactccaaacggcatggatatgcggatgctgcagcca
tgtgatgctccactcagaaggcacttcctgcctggggtgaaagtggagtacagtgtctca
ccacgacagagttcctaccgcgtccaaatccaccgcatacagatccagaatcagctgcca
ggagccatctttccctacgttttttaccctgtgaaactgccaaagtcgatcaccatggat
gcagaacccaaacctctaactgatatcagcatcgttaccaggacagcaggacactcggat
atctctcgcatcaagtacttcaaggtgctgattcaagaaatggatttgaagcttgatctg
ggctttctttatgccatcctggacatgttcacccctgagaacgccagcatcatgagctca
gagcaggaggtggaactgtttgagaatgacatcgagaatatgaagatagaactgaacagc
gtttctgctgctgacacttctcctatcagcctctatgagtacttccacatttcccccatc
aagctgcacctgagtttctctctgagttcaggaggggaagacggcttgaaggagaagcga
gataaagaactcatccccgtccagtccctaaacctgctgctgaagagtatcggagccaca
ctcactgacgcacaggacgtcgtcttcaagctggccttctttgagttgaccttccagttt
tgtaccactcagcagcttcaatgggaggtcatcagacattattctaaacaggctattaaa
cagatgtatgtgctggtgctgggcctggatgtacttggaaatccttttgggctgatcaga
ggactgtctgagggggtggaggccttcttctatgagccctatcagggagccatccagggg
ccggaggagtttgtcgaaggaatggctcttggggtgaaggctctggtggggggagccgta
ggggggatagcaggtgcagcctccaggatcacaggtgccatggcaaagggtgttgctgcc
ataacgatggatgaggactaccagcagaagagacgagaggctatgaacaaacaacccagt
ggcctgagagaggggctgaccaggggcggaaaaggattagtgtctggatttgtcagtggg
atcacagggattgtaaccaaacctatcaaaggagcacaaaaggagggtgcggcaggcttc
tttaaaggtgttggcaaaggtctggttggtgctgtagccagacctacaggaggcattatt
gacatggccagcagtaccttccaagggatcaagagggctgcagagacttcacaagatatt
caatctctgcgtcctcctcgcttcatccacgaggacagagtcatacgaccatataaggag
agggagggcattggcagtcagatgctgcagaaaattgagaacggacgttttgcgaagtac
agatactttgctcatgccaaggtcaatgactccgacttcctgatgattaccaagaggggc
atatttttcgtgaccaaaggcacatttggccagttgacctgtgaatggcagtatctgttt
gaagagttcaccaaagagccgttgattgtagaggaccgccgacttcgcatcgaggccaag
gagagagtaaagtctgtcttccatgccaaagagtttgggaagattatcaacttcagaacc
cccgagatagccaagtgggttctcaccaaactggaggacgcaagagagtttacgcaaagc
ctgactgagaaatga
DBGET
integrated database retrieval system
